CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67642	Soybean	mitochondrion	100.0	100.0
KRH32405	Soybean	nucleus	100.0	100.0
KRH19812	Soybean	nucleus	99.3	99.3
PGSC0003DMT400045338	Potato	extracellular	98.59	98.59
Solyc09g007350.2.1	Tomato	mitochondrion	98.59	98.59
Solyc10g084310.1.1	Tomato	mitochondrion	98.59	98.59
Solyc10g086020.1.1	Tomato	plastid	98.59	98.59
PGSC0003DMT400027147	Potato	mitochondrion	98.59	98.59
PGSC0003DMT400004414	Potato	mitochondrion	98.59	98.59
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	92.96	97.06
KRH24942	Soybean	cytosol	87.32	96.88
KRG89057	Soybean	mitochondrion	83.8	96.75
Zm00001d012978_P001	Maize	extracellular	92.25	96.32
EES19663	Sorghum	mitochondrion	95.77	95.77
EES03842	Sorghum	mitochondrion	95.77	95.77
EER90632	Sorghum	mitochondrion	95.77	95.77
Zm00001d034628_P001	Maize	mitochondrion	95.77	95.77
Zm00001d010566_P001	Maize	plasma membrane	95.77	95.77
Zm00001d042966_P001	Maize	mitochondrion	95.77	95.77
Os03t0818400-01	Rice	nucleus	95.07	95.07
Os01t0834500-01	Rice	mitochondrion	95.07	95.07
AT5G02960.1	Thale cress	mitochondrion	95.07	95.07
Bra009557.1-P	Field mustard	cytosol, mitochondrion	90.85	94.85
CDY11236	Canola	cytosol, mitochondrion	90.85	94.85
CDY07936	Canola	cytosol, mitochondrion	90.85	94.85
CDX70336	Canola	cytosol, mitochondrion	90.85	94.85
CDY04874	Canola	cytosol, mitochondrion	90.85	94.85
CDX80847	Canola	cytosol, mitochondrion	90.85	94.85
CDX73991	Canola	cytosol, mitochondrion	90.85	94.85
CDY55693	Canola	cytosol, mitochondrion	90.85	94.85
Bra028856.1-P	Field mustard	mitochondrion	94.37	94.37
Bra001300.1-P	Field mustard	mitochondrion	94.37	94.37
Bra005745.1-P	Field mustard	cytosol, mitochondrion	90.14	94.12
AT3G09680.1	Thale cress	mitochondrion	92.96	92.96
HORVU1Hr1G071570.3	Barley	mitochondrion	93.66	92.36
Os10t0350001-00	Rice	cytosol, extracellular	27.46	86.67
HORVU5Hr1G112390.2	Barley	mitochondrion	93.66	85.81
Bra003985.1-P	Field mustard	mitochondrion	84.51	84.51
CDY62061	Canola	mitochondrion	83.1	81.94
CDY70106	Canola	mitochondrion	81.69	80.56
CDY72262	Canola	cytosol	26.06	78.72
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	96.48	76.54
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	61.27	76.32
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	96.48	75.69
Zm00001d028137_P001	Maize	cytosol	26.76	74.51
GSMUA_Achr2P23030_001	Banana	mitochondrion	96.48	74.46
CDY10413	Canola	mitochondrion	94.37	73.63
CDX84175	Canola	cytosol	45.07	73.56
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	95.07	71.81
CDY37167	Canola	mitochondrion	53.52	71.7
Bra022086.1-P	Field mustard	cytosol	56.34	69.57
GSMUA_Achr2P22920_001	Banana	mitochondrion	83.8	68.79
CDY71254	Canola	plastid	60.56	67.72
CDY72261	Canola	mitochondrion	25.35	66.67
CDY43631	Canola	cytosol	45.77	64.36
CDY01752	Canola	vacuole	83.1	60.82
Zm00001d036211_P001	Maize	endoplasmic reticulum	45.07	58.18
CDY41304	Canola	endoplasmic reticulum	94.37	57.27
CDY22194	Canola	endoplasmic reticulum	94.37	57.27
HORVU6Hr1G043260.1	Barley	mitochondrion	33.8	54.55
KRH55344	Soybean	cytosol	53.52	52.41
Bra034077.1-P	Field mustard	endoplasmic reticulum	94.37	51.94
Os10t0350450-00	Rice	mitochondrion	61.27	46.77
Zm00001d044342_P002	Maize	cytosol, mitochondrion	59.86	36.02
Zm00001d018970_P001	Maize	cytosol	47.18	26.48
Zm00001d048114_P001	Maize	cytosol	74.65	20.7

Protein Annotations

EntrezGene:100796694	MapMan:17.1.3.1.24	Gene3D:2.40.50.140	EMBL:ACUP02002069	EMBL:ACUP02006116	EMBL:ACUP02012140
EnsemblPlantsGene:GLYMA_19G178800	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0022627
GO:GO:0030529	UniProt:I1L8S1	EnsemblPlants:KRG95930	ProteinID:KRG95930	ProteinID:KRG95930.1	ProteinID:KRH32405.1
ProteinID:KRH67642.1	InterPro:NA-bd_OB-fold	PFAM:PF00164	PIRSF:PIRSF002133	ScanProsite:PS00055	PANTHER:PTHR11652
PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249	TIGRFAMs:TIGR00982	UniParc:UPI0001BA87E1

Description

hypothetical protein

Coordinates

chr19:-:43797744..43799168

Molecular Weight (calculated)

15730.3 Da

IEP (calculated)

11.112

GRAVY (calculated)

-0.589

Length

142 amino acids

Sequence
(BLAST)

001: MGKTHGMGAA RKLKSHRRRQ RWADKSYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.