CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70106	Canola	mitochondrion	95.83	95.83
Bra003985.1-P	Field mustard	mitochondrion	94.44	95.77
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	79.17	83.82
KRH19812	Soybean	nucleus	82.64	83.8
PGSC0003DMT400004414	Potato	mitochondrion	81.94	83.1
PGSC0003DMT400065339	Potato	mitochondrion	81.94	83.1
PGSC0003DMT400045338	Potato	extracellular	81.94	83.1
Solyc09g007350.2.1	Tomato	mitochondrion	81.94	83.1
Solyc10g084310.1.1	Tomato	mitochondrion	81.94	83.1
PGSC0003DMT400027147	Potato	mitochondrion	81.94	83.1
Solyc10g086020.1.1	Tomato	plastid	81.94	83.1
KRH67642	Soybean	mitochondrion	81.94	83.1
KRG95930	Soybean	mitochondrion	81.94	83.1
KRH32405	Soybean	nucleus	81.94	83.1
Zm00001d012978_P001	Maize	extracellular	78.47	83.09
Os03t0818400-01	Rice	nucleus	81.25	82.39
Zm00001d010566_P001	Maize	plasma membrane	81.25	82.39
Os01t0834500-01	Rice	mitochondrion	81.25	82.39
Zm00001d034628_P001	Maize	mitochondrion	81.25	82.39
Zm00001d042966_P001	Maize	mitochondrion	81.25	82.39
EER90632	Sorghum	mitochondrion	81.25	82.39
EES03842	Sorghum	mitochondrion	81.25	82.39
EES19663	Sorghum	mitochondrion	81.25	82.39
CDX70336	Canola	cytosol, mitochondrion	77.78	82.35
CDY55693	Canola	cytosol, mitochondrion	77.78	82.35
CDY11236	Canola	cytosol, mitochondrion	77.78	82.35
CDY07936	Canola	cytosol, mitochondrion	77.78	82.35
CDY04874	Canola	cytosol, mitochondrion	77.78	82.35
CDX80847	Canola	cytosol, mitochondrion	77.78	82.35
CDX73991	Canola	cytosol, mitochondrion	77.78	82.35
KRH24942	Soybean	cytosol	72.92	82.03
HORVU1Hr1G071570.3	Barley	mitochondrion	81.94	81.94
VIT_08s0040g02420.t01	Wine grape	mitochondrion	80.56	81.69
VIT_13s0019g03640.t01	Wine grape	mitochondrion	80.56	81.69
CDY72262	Canola	cytosol	26.39	80.85
Os10t0350001-00	Rice	cytosol, extracellular	25.0	80.0
KRG89057	Soybean	mitochondrion	68.06	79.67
CDX84175	Canola	cytosol	46.53	77.01
HORVU5Hr1G112390.2	Barley	mitochondrion	81.25	75.48
Solyc11g013160.1.1	Tomato	cytosol	31.94	75.41
CDY37167	Canola	mitochondrion	54.17	73.58
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	32.64	72.31
CDY72261	Canola	mitochondrion	27.08	72.22
VIT_06s0004g03410.t01	Wine grape	cytosol	81.25	71.78
CDY43631	Canola	cytosol	46.53	66.34
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	81.94	65.92
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	52.08	65.79
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	81.94	65.19
CDY01752	Canola	vacuole	87.5	64.95
GSMUA_Achr2P23030_001	Banana	mitochondrion	81.94	64.13
Solyc06g011510.1.1	Tomato	cytosol	22.22	64.0
CDY10413	Canola	mitochondrion	80.56	63.74
Zm00001d028137_P001	Maize	cytosol	22.22	62.75
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	81.25	62.23
GSMUA_Achr2P22920_001	Banana	mitochondrion	72.22	60.12
CDY71254	Canola	plastid	51.39	58.27
Zm00001d036211_P001	Maize	endoplasmic reticulum	39.58	51.82
CDY41304	Canola	endoplasmic reticulum	80.56	49.57
CDY22194	Canola	endoplasmic reticulum	80.56	49.57
HORVU6Hr1G043260.1	Barley	mitochondrion	29.86	48.86
KRH55344	Soybean	cytosol	43.06	42.76
Os10t0350450-00	Rice	mitochondrion	51.39	39.78
Zm00001d044342_P002	Maize	cytosol, mitochondrion	50.0	30.51
Zm00001d018970_P001	Maize	cytosol	40.28	22.92
Zm00001d048114_P001	Maize	cytosol	63.19	17.77

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	GO:A0A078JC51	UniProt:A0A078JC51	EnsemblPlants:CDY62061	ProteinID:CDY62061
ProteinID:CDY62061.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00035902001
InterPro:NA-bd_OB-fold	PFAM:PF00164	PIRSF:PIRSF002133	ScanProsite:PS00055	PANTHER:PTHR11652	PANTHER:PTHR11652:SF37
InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249	TIGRFAMs:TIGR00982	UniParc:UPI0004EEEDFC	:

Description

BnaC06g43330DBnaC06g43330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JC51]

Coordinates

chrLK034090:+:7969..9145

Molecular Weight (calculated)

15962.7 Da

IEP (calculated)

11.153

GRAVY (calculated)

-0.541

Length

144 amino acids

Sequence
(BLAST)

001: MSYRKTRGMG SARVLKTRRK TQRWSDKSYK KSHLGNEWNK PFAGSSHAKG IVLELIGVEA KQPNSAIRKC ARIQLIKNGK KVIAFVPNDG CLNLLEPNDE
101: VLISGFGRKG HAVGDIPGVR YKVVKVSGVS LMALYKGKKE KPRS

Best Arabidopsis Sequence Match ( AT3G09680.1 )
(BLAST)

001: MGKTRGMGAG RKLKQLRITQ RWADKHYKKS NRGNEWKKPF ACSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23A40S ribosomal protein S23-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF35]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.