Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion | 75.14 | 100.0 |
| VIT_08s0040g02420.t01 | Wine grape | mitochondrion | 76.8 | 97.89 |
| Solyc10g086020.1.1 | Tomato | plastid | 76.8 | 97.89 |
| Solyc10g084310.1.1 | Tomato | mitochondrion | 76.8 | 97.89 |
| Solyc09g007350.2.1 | Tomato | mitochondrion | 76.8 | 97.89 |
| PGSC0003DMT400065339 | Potato | mitochondrion | 76.8 | 97.89 |
| PGSC0003DMT400045338 | Potato | extracellular | 76.8 | 97.89 |
| PGSC0003DMT400027147 | Potato | mitochondrion | 76.8 | 97.89 |
| PGSC0003DMT400004414 | Potato | mitochondrion | 76.8 | 97.89 |
| VIT_13s0019g03640.t01 | Wine grape | mitochondrion | 76.24 | 97.18 |
| KRH67642 | Soybean | mitochondrion | 75.69 | 96.48 |
| KRH32405 | Soybean | nucleus | 75.69 | 96.48 |
| KRG95930 | Soybean | mitochondrion | 75.69 | 96.48 |
| AT5G02960.1 | Thale cress | mitochondrion | 75.14 | 95.77 |
| KRH19812 | Soybean | nucleus | 75.14 | 95.77 |
| Bra028856.1-P | Field mustard | mitochondrion | 74.59 | 95.07 |
| Bra001300.1-P | Field mustard | mitochondrion | 74.59 | 95.07 |
| CDY04874 | Canola | cytosol, mitochondrion | 71.27 | 94.85 |
| CDX70336 | Canola | cytosol, mitochondrion | 71.27 | 94.85 |
| CDX73991 | Canola | cytosol, mitochondrion | 71.27 | 94.85 |
| CDX80847 | Canola | cytosol, mitochondrion | 71.27 | 94.85 |
| Bra009557.1-P | Field mustard | cytosol, mitochondrion | 71.27 | 94.85 |
| CDY55693 | Canola | cytosol, mitochondrion | 71.27 | 94.85 |
| CDY07936 | Canola | cytosol, mitochondrion | 71.27 | 94.85 |
| CDY11236 | Canola | cytosol, mitochondrion | 71.27 | 94.85 |
| Bra005745.1-P | Field mustard | cytosol, mitochondrion | 70.72 | 94.12 |
| KRH24942 | Soybean | cytosol | 66.3 | 93.75 |
| AT3G09680.1 | Thale cress | mitochondrion | 73.48 | 93.66 |
| KRG89057 | Soybean | mitochondrion | 62.98 | 92.68 |
| Solyc06g005110.2.1 | Tomato | mitochondrion, nucleus | 30.94 | 86.15 |
| Solyc11g013160.1.1 | Tomato | cytosol | 28.73 | 85.25 |
| Bra003985.1-P | Field mustard | mitochondrion | 66.3 | 84.51 |
| VIT_06s0004g03410.t01 | Wine grape | cytosol | 75.69 | 84.05 |
| CDY62061 | Canola | mitochondrion | 65.19 | 81.94 |
| GSMUA_Achr2P23030_001 | Banana | mitochondrion | 81.22 | 79.89 |
| GSMUA_Achr3P01170_001 | Banana | mitochondrion, plastid | 79.01 | 79.89 |
| CDY70106 | Canola | mitochondrion | 63.54 | 79.86 |
| GSMUA_Achr4P17160_001 | Banana | cytosol, mitochondrion | 50.28 | 79.82 |
| CDY72262 | Canola | cytosol | 20.44 | 78.72 |
| CDX84175 | Canola | cytosol | 35.91 | 74.71 |
| CDY10413 | Canola | mitochondrion | 74.59 | 74.18 |
| GSMUA_Achr2P22920_001 | Banana | mitochondrion | 70.17 | 73.41 |
| CDY37167 | Canola | mitochondrion | 42.54 | 72.64 |
| Solyc06g011510.1.1 | Tomato | cytosol | 19.34 | 70.0 |
| Bra022086.1-P | Field mustard | cytosol | 44.2 | 69.57 |
| CDY72261 | Canola | mitochondrion | 20.44 | 68.52 |
| CDY71254 | Canola | plastid | 48.07 | 68.5 |
| CDY43631 | Canola | cytosol | 37.02 | 66.34 |
| CDY01752 | Canola | vacuole | 64.64 | 60.31 |
| CDY41304 | Canola | endoplasmic reticulum | 75.69 | 58.55 |
| CDY22194 | Canola | endoplasmic reticulum | 75.69 | 58.55 |
| KRH55344 | Soybean | cytosol | 42.54 | 53.1 |
| Bra034077.1-P | Field mustard | endoplasmic reticulum | 75.69 | 53.1 |
Protein Annotations
| MapMan:17.1.3.1.24 | Gene3D:2.40.50.140 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015935 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr5G14800_001 |
| EnsemblPlants:GSMUA_Achr5P14800_001 | EnsemblPlants:GSMUA_Achr5T14800_001 | UniProt:M0SYK9 | InterPro:NA-bd_OB-fold | PFAM:PF00164 | ScanProsite:PS00055 |
| PANTHER:PTHR11652 | PANTHER:PTHR11652:SF37 | InterPro:Ribosomal_S12/S23 | InterPro:Ribosomal_S23_euk/arc | SUPFAM:SSF50249 | TIGRFAMs:TIGR00982 |
| UniParc:UPI000294D442 | SEG:seg | : | : | : | : |
Description
40S ribosomal protein S23 [Source:GMGC_GENE;Acc:GSMUA_Achr5G14800_001]
Coordinates
chr5:+:10713786..10715830
Molecular Weight (calculated)
20297.0 Da
IEP (calculated)
11.368
GRAVY (calculated)
-0.615
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLVLVRLGF PPPAADPRFF DNPKRRQWPE EGGRRTFDKM GKTRGMGAGR KLKTHRRRQR WADKAYKKSH LGNEWKKPFA GSSHAKGIVL EKIGIEAKQP
101: NSAIRKCARV QLIKNGKKIA AFVPNDGCLN FIEENDEVLI AGFGRKGHAV GDIPGVRFKV VKVSGVSLLA LFKEKKEKPR S
101: NSAIRKCARV QLIKNGKKIA AFVPNDGCLN FIEENDEVLI AGFGRKGHAV GDIPGVRFKV VKVSGVSLLA LFKEKKEKPR S
001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
Arabidopsis Description
RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.