Factsheet for Solyc10g086020.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 22908117
plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g084310.1.1	Tomato	mitochondrion	100.0	100.0
PGSC0003DMT400045338	Potato	extracellular	100.0	100.0
Solyc09g007350.2.1	Tomato	mitochondrion	100.0	100.0
KRH67642	Soybean	mitochondrion	98.59	98.59
KRH32405	Soybean	nucleus	98.59	98.59
KRG95930	Soybean	mitochondrion	98.59	98.59
KRH19812	Soybean	nucleus	97.89	97.89
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	93.66	97.79
Zm00001d042966_P001	Maize	mitochondrion	97.18	97.18
Zm00001d034628_P001	Maize	mitochondrion	97.18	97.18
EES19663	Sorghum	mitochondrion	97.18	97.18
EES03842	Sorghum	mitochondrion	97.18	97.18
EER90632	Sorghum	mitochondrion	97.18	97.18
Zm00001d010566_P001	Maize	plasma membrane	97.18	97.18
Zm00001d012978_P001	Maize	extracellular	92.96	97.06
AT5G02960.1	Thale cress	mitochondrion	96.48	96.48
Os03t0818400-01	Rice	nucleus	96.48	96.48
Os01t0834500-01	Rice	mitochondrion	96.48	96.48
Bra001300.1-P	Field mustard	mitochondrion	95.77	95.77
Bra028856.1-P	Field mustard	mitochondrion	95.77	95.77
CDY11236	Canola	cytosol, mitochondrion	91.55	95.59
Bra009557.1-P	Field mustard	cytosol, mitochondrion	91.55	95.59
CDY55693	Canola	cytosol, mitochondrion	91.55	95.59
CDX70336	Canola	cytosol, mitochondrion	91.55	95.59
CDX73991	Canola	cytosol, mitochondrion	91.55	95.59
CDX80847	Canola	cytosol, mitochondrion	91.55	95.59
CDY04874	Canola	cytosol, mitochondrion	91.55	95.59
CDY07936	Canola	cytosol, mitochondrion	91.55	95.59
Bra005745.1-P	Field mustard	cytosol, mitochondrion	90.85	94.85
AT3G09680.1	Thale cress	mitochondrion	94.37	94.37
HORVU1Hr1G071570.3	Barley	mitochondrion	95.07	93.75
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	40.85	89.23
HORVU5Hr1G112390.2	Barley	mitochondrion	95.07	87.1
Solyc11g013160.1.1	Tomato	cytosol	37.32	86.89
Os10t0350001-00	Rice	cytosol, extracellular	27.46	86.67
Bra003985.1-P	Field mustard	mitochondrion	84.51	84.51
CDY62061	Canola	mitochondrion	83.1	81.94
CDY70106	Canola	mitochondrion	80.99	79.86
CDY72262	Canola	cytosol	26.06	78.72
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	97.89	77.65
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	61.97	77.19
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	97.89	76.8
GSMUA_Achr2P23030_001	Banana	mitochondrion	97.89	75.54
CDY10413	Canola	mitochondrion	95.77	74.73
CDX84175	Canola	cytosol	45.77	74.71
Zm00001d028137_P001	Maize	cytosol	26.76	74.51
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	96.48	72.87
CDY37167	Canola	mitochondrion	54.23	72.64
Solyc06g011510.1.1	Tomato	cytosol	25.35	72.0
GSMUA_Achr2P22920_001	Banana	mitochondrion	85.21	69.94
Bra022086.1-P	Field mustard	cytosol	56.34	69.57
CDY71254	Canola	plastid	61.97	69.29
CDY72261	Canola	mitochondrion	25.35	66.67
CDY43631	Canola	cytosol	46.48	65.35
CDY01752	Canola	vacuole	83.1	60.82
Zm00001d036211_P001	Maize	endoplasmic reticulum	46.48	60.0
CDY41304	Canola	endoplasmic reticulum	95.77	58.12
CDY22194	Canola	endoplasmic reticulum	95.77	58.12
HORVU6Hr1G043260.1	Barley	mitochondrion	35.21	56.82
Bra034077.1-P	Field mustard	endoplasmic reticulum	95.77	52.71
KRH55344	Soybean	cytosol	53.52	52.41
Os10t0350450-00	Rice	mitochondrion	61.97	47.31
Zm00001d044342_P002	Maize	cytosol, mitochondrion	59.86	36.02
Zm00001d018970_P001	Maize	cytosol	47.89	26.88
Zm00001d048114_P001	Maize	cytosol	75.35	20.9

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538
GO:GO:0022627	GO:GO:0030529	UniProt:K4D3L7	InterPro:NA-bd_OB-fold	PFAM:PF00164	PIRSF:PIRSF002133
ScanProsite:PS00055	PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249
EnsemblPlantsGene:Solyc10g086020.1	EnsemblPlants:Solyc10g086020.1.1	TIGRFAMs:TIGR00982	UniParc:UPI00005D3B60	:	:

Description

No Description!

Coordinates

chr10:-:65006812..65008610

Molecular Weight (calculated)

15735.4 Da

IEP (calculated)

11.191

GRAVY (calculated)

-0.614

Length

142 amino acids

Sequence
(BLAST)

001: MGKTRGMGAG RKLKSHRRRQ RWADKSYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.