Factsheet for Bra003985.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62061	Canola	mitochondrion	95.77	94.44
CDY70106	Canola	mitochondrion	95.77	94.44
KRH19812	Soybean	nucleus	85.21	85.21
KRG95930	Soybean	mitochondrion	84.51	84.51
PGSC0003DMT400027147	Potato	mitochondrion	84.51	84.51
PGSC0003DMT400045338	Potato	extracellular	84.51	84.51
KRH67642	Soybean	mitochondrion	84.51	84.51
PGSC0003DMT400065339	Potato	mitochondrion	84.51	84.51
Solyc09g007350.2.1	Tomato	mitochondrion	84.51	84.51
Solyc10g084310.1.1	Tomato	mitochondrion	84.51	84.51
Solyc10g086020.1.1	Tomato	plastid	84.51	84.51
PGSC0003DMT400004414	Potato	mitochondrion	84.51	84.51
KRH32405	Soybean	nucleus	84.51	84.51
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	80.28	83.82
Zm00001d010566_P001	Maize	plasma membrane	83.8	83.8
EES19663	Sorghum	mitochondrion	83.8	83.8
EES03842	Sorghum	mitochondrion	83.8	83.8
EER90632	Sorghum	mitochondrion	83.8	83.8
Zm00001d034628_P001	Maize	mitochondrion	83.8	83.8
Zm00001d042966_P001	Maize	mitochondrion	83.8	83.8
Os01t0834500-01	Rice	mitochondrion	83.8	83.8
Os03t0818400-01	Rice	nucleus	83.8	83.8
VIT_08s0040g02420.t01	Wine grape	mitochondrion	83.1	83.1
VIT_13s0019g03640.t01	Wine grape	mitochondrion	83.1	83.1
Bra028856.1-P	Field mustard	mitochondrion	83.1	83.1
Bra001300.1-P	Field mustard	mitochondrion	83.1	83.1
Zm00001d012978_P001	Maize	extracellular	79.58	83.09
Bra009557.1-P	Field mustard	cytosol, mitochondrion	78.87	82.35
KRH24942	Soybean	cytosol	73.94	82.03
Bra005745.1-P	Field mustard	cytosol, mitochondrion	78.17	81.62
HORVU1Hr1G071570.3	Barley	mitochondrion	82.39	81.25
KRG89057	Soybean	mitochondrion	69.72	80.49
Os10t0350001-00	Rice	cytosol, extracellular	25.35	80.0
Solyc11g013160.1.1	Tomato	cytosol	33.1	77.05
HORVU5Hr1G112390.2	Barley	mitochondrion	82.39	75.48
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	34.51	75.38
Bra022086.1-P	Field mustard	cytosol	59.15	73.04
VIT_06s0004g03410.t01	Wine grape	cytosol	81.69	71.17
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	84.51	67.04
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	84.51	66.3
Solyc06g011510.1.1	Tomato	cytosol	23.24	66.0
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	52.82	65.79
GSMUA_Achr2P23030_001	Banana	mitochondrion	84.51	65.22
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	83.8	63.3
Zm00001d028137_P001	Maize	cytosol	22.54	62.75
GSMUA_Achr2P22920_001	Banana	mitochondrion	73.94	60.69
Zm00001d036211_P001	Maize	endoplasmic reticulum	40.14	51.82
HORVU6Hr1G043260.1	Barley	mitochondrion	30.28	48.86
Bra034077.1-P	Field mustard	endoplasmic reticulum	83.1	45.74
KRH55344	Soybean	cytosol	43.66	42.76
Os10t0350450-00	Rice	mitochondrion	52.82	40.32
Zm00001d044342_P002	Maize	cytosol, mitochondrion	50.7	30.51
Zm00001d018970_P001	Maize	cytosol	41.55	23.32
Zm00001d048114_P001	Maize	cytosol	65.49	18.16

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	EnsemblPlantsGene:Bra003985	EnsemblPlants:Bra003985.1	EnsemblPlants:Bra003985.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0015935	GO:GO:0019538	GO:GO:0030529	UniProt:M4CIF1	InterPro:NA-bd_OB-fold	PFAM:PF00164
PIRSF:PIRSF002133	ScanProsite:PS00055	PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc
SUPFAM:SSF50249	TIGRFAMs:TIGR00982	UniParc:UPI000254196D	:	:	:

Description

AT5G02960 (E=3e-066) | 40S ribosomal protein S23 (RPS23B)

Coordinates

chrA07:+:16127023..16127736

Molecular Weight (calculated)

15584.1 Da

IEP (calculated)

11.177

GRAVY (calculated)

-0.580

Length

142 amino acids

Sequence
(BLAST)

001: MGKTRGMGSA RVQKTRRKTQ RWSDKSYKKS HLGNEWKKPF AGSSHAKGIV LELIGVEAKQ PNSAIRKCAR IQLIKNGKKV VAFVPNDGCL NLLEPNDEVL
101: ISGFGRKGHA VGDIPGVRYK VVKVSGVSLS ALYKGKKEKP RS

Best Arabidopsis Sequence Match ( AT3G09680.1 )
(BLAST)

001: MGKTRGMGAG RKLKQLRITQ RWADKHYKKS NRGNEWKKPF ACSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23A40S ribosomal protein S23-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF35]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.