Factsheet for Zm00001d010566_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

plastid: 23198870
plasma membrane: 23353019
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012978_P001	Maize	extracellular	95.77	100.0
Zm00001d042966_P001	Maize	mitochondrion	100.0	100.0
EES19663	Sorghum	mitochondrion	100.0	100.0
Zm00001d034628_P001	Maize	mitochondrion	100.0	100.0
VIT_08s0040g02420.t01	Wine grape	mitochondrion	97.18	97.18
Solyc10g086020.1.1	Tomato	plastid	97.18	97.18
Solyc10g084310.1.1	Tomato	mitochondrion	97.18	97.18
Solyc09g007350.2.1	Tomato	mitochondrion	97.18	97.18
PGSC0003DMT400065339	Potato	mitochondrion	97.18	97.18
PGSC0003DMT400045338	Potato	extracellular	97.18	97.18
PGSC0003DMT400027147	Potato	mitochondrion	97.18	97.18
PGSC0003DMT400004414	Potato	mitochondrion	97.18	97.18
HORVU1Hr1G071570.3	Barley	mitochondrion	97.89	96.53
AT5G02960.1	Thale cress	mitochondrion	96.48	96.48
VIT_13s0019g03640.t01	Wine grape	mitochondrion	96.48	96.48
KRH32405	Soybean	nucleus	95.77	95.77
KRG95930	Soybean	mitochondrion	95.77	95.77
Bra001300.1-P	Field mustard	mitochondrion	95.77	95.77
Bra028856.1-P	Field mustard	mitochondrion	95.77	95.77
KRH67642	Soybean	mitochondrion	95.77	95.77
CDY07936	Canola	cytosol, mitochondrion	91.55	95.59
Bra009557.1-P	Field mustard	cytosol, mitochondrion	91.55	95.59
CDX80847	Canola	cytosol, mitochondrion	91.55	95.59
CDX73991	Canola	cytosol, mitochondrion	91.55	95.59
CDY55693	Canola	cytosol, mitochondrion	91.55	95.59
CDX70336	Canola	cytosol, mitochondrion	91.55	95.59
CDY04874	Canola	cytosol, mitochondrion	91.55	95.59
CDY11236	Canola	cytosol, mitochondrion	91.55	95.59
KRH19812	Soybean	nucleus	95.07	95.07
Bra005745.1-P	Field mustard	cytosol, mitochondrion	90.85	94.85
AT3G09680.1	Thale cress	mitochondrion	93.66	93.66
KRH24942	Soybean	cytosol	83.8	92.97
KRG89057	Soybean	mitochondrion	79.58	91.87
Solyc11g013160.1.1	Tomato	cytosol	37.32	86.89
Os10t0350001-00	Rice	cytosol, extracellular	27.46	86.67
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	38.73	84.62
Bra003985.1-P	Field mustard	mitochondrion	83.8	83.8
VIT_06s0004g03410.t01	Wine grape	cytosol	95.07	82.82
CDY62061	Canola	mitochondrion	82.39	81.25
CDY72262	Canola	cytosol	26.76	80.85
CDY70106	Canola	mitochondrion	80.28	79.17
Zm00001d028137_P001	Maize	cytosol	27.46	76.47
CDX84175	Canola	cytosol	46.48	75.86
CDY10413	Canola	mitochondrion	95.77	74.73
CDY37167	Canola	mitochondrion	54.93	73.58
Solyc06g011510.1.1	Tomato	cytosol	25.35	72.0
Bra022086.1-P	Field mustard	cytosol	57.04	70.43
CDY71254	Canola	plastid	61.97	69.29
CDY72261	Canola	mitochondrion	25.35	66.67
CDY43631	Canola	cytosol	47.18	66.34
Zm00001d036211_P001	Maize	endoplasmic reticulum	48.59	62.73
CDY01752	Canola	vacuole	83.1	60.82
HORVU6Hr1G043260.1	Barley	mitochondrion	37.32	60.23
CDY41304	Canola	endoplasmic reticulum	95.77	58.12
CDY22194	Canola	endoplasmic reticulum	95.77	58.12
Bra034077.1-P	Field mustard	endoplasmic reticulum	95.77	52.71
KRH55344	Soybean	cytosol	51.41	50.34
Zm00001d044342_P002	Maize	cytosol, mitochondrion	62.68	37.71
Zm00001d018970_P001	Maize	cytosol	48.59	27.27
Zm00001d048114_P001	Maize	cytosol	76.06	21.09

Protein Annotations

EntrezGene:100192600	EntrezGene:101027156	EntrezGene:103625771	EntrezGene:103630443	EntrezGene:103644248	MapMan:17.1.3.1.24
Gene3D:2.40.50.140	ProteinID:AQK94354.1	UniProt:B4FBY5	EMBL:BT034623	EMBL:BT037885	EMBL:BT040449
EMBL:BT086827	EMBL:EU952753	EMBL:EU959076	EMBL:EU959530	EMBL:EU962371	EMBL:EU964063
EMBL:EU976189	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0030529	InterPro:NA-bd_OB-fold
ProteinID:ONM10832.1	ProteinID:ONM36624.1	PFAM:PF00164	PIRSF:PIRSF002133	ScanProsite:PS00055	PANTHER:PTHR11652
PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249	TIGRFAMs:TIGR00982	UniParc:UPI00017B6456
EnsemblPlantsGene:Zm00001d010566	EnsemblPlants:Zm00001d010566_P001	EnsemblPlants:Zm00001d010566_T001	:	:	:

Description

40S ribosomal protein S23-2

Coordinates

chr8:+:120517493..120519263

Molecular Weight (calculated)

15677.3 Da

IEP (calculated)

11.112

GRAVY (calculated)

-0.590

Length

142 amino acids

Sequence
(BLAST)

001: MGKTRGMGAG RKLKTHRRNQ RWADKAYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLVKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.