Factsheet for Bra022086.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY37167	Canola	mitochondrion	84.35	91.51
CDX84175	Canola	cytosol	66.96	88.51
CDY43631	Canola	cytosol	68.7	78.22
CDY72261	Canola	mitochondrion	36.52	77.78
Os10t0350001-00	Rice	cytosol, extracellular	25.22	64.44
Zm00001d012978_P001	Maize	extracellular	70.43	59.56
Bra003985.1-P	Field mustard	mitochondrion	73.04	59.15
Bra009557.1-P	Field mustard	cytosol, mitochondrion	69.57	58.82
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	69.57	58.82
Bra005745.1-P	Field mustard	cytosol, mitochondrion	68.7	58.09
Os01t0834500-01	Rice	mitochondrion	70.43	57.04
Os03t0818400-01	Rice	nucleus	70.43	57.04
Zm00001d034628_P001	Maize	mitochondrion	70.43	57.04
Zm00001d042966_P001	Maize	mitochondrion	70.43	57.04
EES19663	Sorghum	mitochondrion	70.43	57.04
EES03842	Sorghum	mitochondrion	70.43	57.04
EER90632	Sorghum	mitochondrion	70.43	57.04
Zm00001d010566_P001	Maize	plasma membrane	70.43	57.04
KRH24942	Soybean	cytosol	63.48	57.03
VIT_13s0019g03640.t01	Wine grape	mitochondrion	69.57	56.34
VIT_08s0040g02420.t01	Wine grape	mitochondrion	69.57	56.34
Solyc10g086020.1.1	Tomato	plastid	69.57	56.34
Solyc10g084310.1.1	Tomato	mitochondrion	69.57	56.34
Solyc09g007350.2.1	Tomato	mitochondrion	69.57	56.34
PGSC0003DMT400065339	Potato	mitochondrion	69.57	56.34
PGSC0003DMT400045338	Potato	extracellular	69.57	56.34
PGSC0003DMT400027147	Potato	mitochondrion	69.57	56.34
PGSC0003DMT400004414	Potato	mitochondrion	69.57	56.34
KRH19812	Soybean	nucleus	69.57	56.34
Bra001300.1-P	Field mustard	mitochondrion	69.57	56.34
KRH32405	Soybean	nucleus	69.57	56.34
KRH67642	Soybean	mitochondrion	69.57	56.34
KRG95930	Soybean	mitochondrion	69.57	56.34
Bra028856.1-P	Field mustard	mitochondrion	69.57	56.34
HORVU1Hr1G071570.3	Barley	mitochondrion	70.43	56.25
Zm00001d028137_P001	Maize	cytosol	24.35	54.9
KRG89057	Soybean	mitochondrion	56.52	52.85
HORVU5Hr1G112390.2	Barley	mitochondrion	70.43	52.26
Solyc11g013160.1.1	Tomato	cytosol	26.96	50.82
VIT_06s0004g03410.t01	Wine grape	cytosol	69.57	49.08
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	69.57	44.69
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	69.57	44.2
Solyc06g011510.1.1	Tomato	cytosol	19.13	44.0
GSMUA_Achr2P23030_001	Banana	mitochondrion	69.57	43.48
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	70.43	43.09
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	41.74	42.11
GSMUA_Achr2P22920_001	Banana	mitochondrion	58.26	38.73
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	19.13	33.85
Bra034077.1-P	Field mustard	endoplasmic reticulum	69.57	31.01
KRH55344	Soybean	cytosol	35.65	28.28
Zm00001d036211_P001	Maize	endoplasmic reticulum	26.96	28.18
Os10t0350450-00	Rice	mitochondrion	42.61	26.34
HORVU6Hr1G043260.1	Barley	mitochondrion	15.65	20.45
Zm00001d044342_P002	Maize	cytosol, mitochondrion	41.74	20.34
Zm00001d018970_P001	Maize	cytosol	37.39	17.0
Zm00001d048114_P001	Maize	cytosol	59.13	13.28

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	EnsemblPlantsGene:Bra022086	EnsemblPlants:Bra022086.1	EnsemblPlants:Bra022086.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	UniProt:M4DZY9	InterPro:NA-bd_OB-fold	PFAM:PF00164	PIRSF:PIRSF002133
PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	SUPFAM:SSF50249	UniParc:UPI0002546117	:

Description

AT5G02960 (E=9e-019) | 40S ribosomal protein S23 (RPS23B)

Coordinates

chrA02:+:19145765..19146754

Molecular Weight (calculated)

12409.4 Da

IEP (calculated)

10.667

GRAVY (calculated)

-0.330

Length

115 amino acids

Sequence
(BLAST)

001: MYRSEVVRQE LQEGSPKKYK PLAGASHAKG IVLELIGMEA KQPCSGICKC ARVQLVKNGK KVAAFVPNDG RGLISGFGRK SHAVGDIPGV RYKAVKVSGV
101: LLSALYKDKK EKPRS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.