CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	93.75	88.24
Zm00001d012978_P001	Maize	extracellular	92.97	87.5
KRG95930	Soybean	mitochondrion	96.88	87.32
KRH32405	Soybean	nucleus	96.88	87.32
KRH67642	Soybean	mitochondrion	96.88	87.32
KRH19812	Soybean	nucleus	96.09	86.62
PGSC0003DMT400065339	Potato	mitochondrion	96.09	86.62
CDY55693	Canola	cytosol, mitochondrion	91.41	86.03
CDY11236	Canola	cytosol, mitochondrion	91.41	86.03
CDY07936	Canola	cytosol, mitochondrion	91.41	86.03
CDY04874	Canola	cytosol, mitochondrion	91.41	86.03
CDX73991	Canola	cytosol, mitochondrion	91.41	86.03
CDX70336	Canola	cytosol, mitochondrion	91.41	86.03
Bra009557.1-P	Field mustard	cytosol, mitochondrion	91.41	86.03
CDX80847	Canola	cytosol, mitochondrion	91.41	86.03
Bra005745.1-P	Field mustard	cytosol, mitochondrion	90.62	85.29
VIT_08s0040g02420.t01	Wine grape	mitochondrion	94.53	85.21
VIT_13s0019g03640.t01	Wine grape	mitochondrion	93.75	84.51
Os10t0350001-00	Rice	cytosol, extracellular	29.69	84.44
Zm00001d034628_P001	Maize	mitochondrion	92.97	83.8
Zm00001d042966_P001	Maize	mitochondrion	92.97	83.8
EES19663	Sorghum	mitochondrion	92.97	83.8
EES03842	Sorghum	mitochondrion	92.97	83.8
EER90632	Sorghum	mitochondrion	92.97	83.8
Zm00001d010566_P001	Maize	plasma membrane	92.97	83.8
KRG89057	Soybean	mitochondrion	80.47	83.74
AT5G02960.1	Thale cress	mitochondrion	92.19	83.1
Os01t0834500-01	Rice	mitochondrion	92.19	83.1
Os03t0818400-01	Rice	nucleus	92.19	83.1
Bra028856.1-P	Field mustard	mitochondrion	91.41	82.39
Bra001300.1-P	Field mustard	mitochondrion	91.41	82.39
HORVU1Hr1G071570.3	Barley	mitochondrion	92.19	81.94
AT3G09680.1	Thale cress	mitochondrion	89.84	80.99
HORVU5Hr1G112390.2	Barley	mitochondrion	92.19	76.13
Bra003985.1-P	Field mustard	mitochondrion	82.03	73.94
VIT_06s0004g03410.t01	Wine grape	cytosol	93.75	73.62
CDY62061	Canola	mitochondrion	82.03	72.92
CDY70106	Canola	mitochondrion	80.47	71.53
CDY72262	Canola	cytosol	25.78	70.21
CDX84175	Canola	cytosol	46.88	68.97
Zm00001d028137_P001	Maize	cytosol	27.34	68.63
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	60.16	67.54
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	93.75	67.04
CDY72261	Canola	mitochondrion	28.12	66.67
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	93.75	66.3
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	33.59	66.15
GSMUA_Achr2P23030_001	Banana	mitochondrion	93.75	65.22
CDY37167	Canola	mitochondrion	53.91	65.09
CDY10413	Canola	mitochondrion	91.41	64.29
Bra022086.1-P	Field mustard	cytosol	57.03	63.48
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	92.19	62.77
CDY43631	Canola	cytosol	47.66	60.4
GSMUA_Achr2P22920_001	Banana	mitochondrion	80.47	59.54
CDY71254	Canola	plastid	54.69	55.12
CDY01752	Canola	vacuole	80.47	53.09
CDY41304	Canola	endoplasmic reticulum	91.41	50.0
CDY22194	Canola	endoplasmic reticulum	91.41	50.0
HORVU6Hr1G043260.1	Barley	mitochondrion	31.25	45.45
Zm00001d036211_P001	Maize	endoplasmic reticulum	39.06	45.45
Bra034077.1-P	Field mustard	endoplasmic reticulum	91.41	45.35
KRH55344	Soybean	cytosol	50.78	44.83
Os10t0350450-00	Rice	mitochondrion	56.25	38.71
Zm00001d044342_P002	Maize	cytosol, mitochondrion	60.16	32.63
Zm00001d018970_P001	Maize	cytosol	44.53	22.53
Zm00001d048114_P001	Maize	cytosol	71.88	17.97

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	UniProt:A0A0R0H296	EMBL:ACUP02007191	EnsemblPlantsGene:GLYMA_12G072300	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	EnsemblPlants:KRH24942
ProteinID:KRH24942	ProteinID:KRH24942.1	InterPro:NA-bd_OB-fold	PFAM:PF00164	PIRSF:PIRSF002133	ScanProsite:PS00055
PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249	UniParc:UPI0006EDA4D9

Description

hypothetical protein

Coordinates

chr12:+:5328488..5329092

Molecular Weight (calculated)

14226.4 Da

IEP (calculated)

11.235

GRAVY (calculated)

-0.704

Length

128 amino acids

Sequence
(BLAST)

001: MGAARKLNSH RRRQRKADKS YKKSHLGNEW KKPFAGSSHA KGITKQPNSA IRKCARVQLI KNGKKIAAFV PNDGCLNYIE ENDEMLIAGF GRKGHAVGDI
101: PGVRFKVVKV SGVSLLALFK EKKEKPRS

Best Arabidopsis Sequence Match ( AT3G09680.1 )
(BLAST)

001: MGKTRGMGAG RKLKQLRITQ RWADKHYKKS NRGNEWKKPF ACSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23A40S ribosomal protein S23-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF35]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.