CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034628_P001	Maize	mitochondrion	100.0	100.0
Zm00001d012978_P001	Maize	extracellular	95.77	100.0
EES19663	Sorghum	mitochondrion	100.0	100.0
EES03842	Sorghum	mitochondrion	100.0	100.0
Os03t0818400-01	Rice	nucleus	99.3	99.3
VIT_08s0040g02420.t01	Wine grape	mitochondrion	97.18	97.18
Solyc10g086020.1.1	Tomato	plastid	97.18	97.18
Solyc10g084310.1.1	Tomato	mitochondrion	97.18	97.18
Solyc09g007350.2.1	Tomato	mitochondrion	97.18	97.18
PGSC0003DMT400065339	Potato	mitochondrion	97.18	97.18
PGSC0003DMT400045338	Potato	extracellular	97.18	97.18
PGSC0003DMT400027147	Potato	mitochondrion	97.18	97.18
PGSC0003DMT400004414	Potato	mitochondrion	97.18	97.18
AT5G02960.1	Thale cress	mitochondrion	96.48	96.48
VIT_13s0019g03640.t01	Wine grape	mitochondrion	96.48	96.48
KRG95930	Soybean	mitochondrion	95.77	95.77
Bra001300.1-P	Field mustard	mitochondrion	95.77	95.77
KRH32405	Soybean	nucleus	95.77	95.77
Bra028856.1-P	Field mustard	mitochondrion	95.77	95.77
KRH67642	Soybean	mitochondrion	95.77	95.77
CDX70336	Canola	cytosol, mitochondrion	91.55	95.59
CDY07936	Canola	cytosol, mitochondrion	91.55	95.59
CDY04874	Canola	cytosol, mitochondrion	91.55	95.59
CDX80847	Canola	cytosol, mitochondrion	91.55	95.59
CDX73991	Canola	cytosol, mitochondrion	91.55	95.59
CDY55693	Canola	cytosol, mitochondrion	91.55	95.59
Bra009557.1-P	Field mustard	cytosol, mitochondrion	91.55	95.59
CDY11236	Canola	cytosol, mitochondrion	91.55	95.59
KRH19812	Soybean	nucleus	95.07	95.07
Bra005745.1-P	Field mustard	cytosol, mitochondrion	90.85	94.85
AT3G09680.1	Thale cress	mitochondrion	93.66	93.66
KRH24942	Soybean	cytosol	83.8	92.97
KRG89057	Soybean	mitochondrion	79.58	91.87
HORVU5Hr1G112390.2	Barley	mitochondrion	97.89	89.68
Solyc11g013160.1.1	Tomato	cytosol	37.32	86.89
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	38.73	84.62
Bra003985.1-P	Field mustard	mitochondrion	83.8	83.8
VIT_06s0004g03410.t01	Wine grape	cytosol	95.07	82.82
CDY62061	Canola	mitochondrion	82.39	81.25
CDY72262	Canola	cytosol	26.76	80.85
CDY70106	Canola	mitochondrion	80.28	79.17
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	61.97	77.19
CDX84175	Canola	cytosol	46.48	75.86
CDY10413	Canola	mitochondrion	95.77	74.73
CDY37167	Canola	mitochondrion	54.93	73.58
Solyc06g011510.1.1	Tomato	cytosol	25.35	72.0
Bra022086.1-P	Field mustard	cytosol	57.04	70.43
CDY71254	Canola	plastid	61.97	69.29
CDY72261	Canola	mitochondrion	25.35	66.67
CDY43631	Canola	cytosol	47.18	66.34
CDY01752	Canola	vacuole	83.1	60.82
CDY41304	Canola	endoplasmic reticulum	95.77	58.12
CDY22194	Canola	endoplasmic reticulum	95.77	58.12
Bra034077.1-P	Field mustard	endoplasmic reticulum	95.77	52.71
KRH55344	Soybean	cytosol	51.41	50.34

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	EntrezGene:8057378	EntrezGene:8072558	EntrezGene:8085434	UniProt:C5WV32
EnsemblPlants:EER90632	ProteinID:EER90632	ProteinID:EER90632.1	ProteinID:EES03842.1	ProteinID:EES19663.1	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0022627	GO:GO:0030529	InterPro:NA-bd_OB-fold
PFAM:PF00164	PIRSF:PIRSF002133	ScanProsite:PS00055	PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23
InterPro:Ribosomal_S23_euk/arc	EnsemblPlantsGene:SORBI_3001G036900	SUPFAM:SSF50249	unigene:Sbi.18004	unigene:Sbi.21040	TIGRFAMs:TIGR00982
UniParc:UPI00017B6456	RefSeq:XP_002441233.1	RefSeq:XP_002458722.1	RefSeq:XP_002463634.1	:	:

Description

hypothetical protein

Coordinates

chr1:+:2743597..2745712

Molecular Weight (calculated)

15677.3 Da

IEP (calculated)

11.112

GRAVY (calculated)

-0.590

Length

142 amino acids

Sequence
(BLAST)

001: MGKTRGMGAG RKLKTHRRNQ RWADKAYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLVKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.