Factsheet for Zm00001d012978_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90632	Sorghum	mitochondrion	100.0	95.77
Zm00001d042966_P001	Maize	mitochondrion	100.0	95.77
Zm00001d034628_P001	Maize	mitochondrion	100.0	95.77
Zm00001d010566_P001	Maize	plasma membrane	100.0	95.77
Bra009557.1-P	Field mustard	cytosol, mitochondrion	95.59	95.59
CDY55693	Canola	cytosol, mitochondrion	95.59	95.59
CDX70336	Canola	cytosol, mitochondrion	95.59	95.59
CDX73991	Canola	cytosol, mitochondrion	95.59	95.59
CDX80847	Canola	cytosol, mitochondrion	95.59	95.59
CDY11236	Canola	cytosol, mitochondrion	95.59	95.59
CDY07936	Canola	cytosol, mitochondrion	95.59	95.59
CDY04874	Canola	cytosol, mitochondrion	95.59	95.59
Os03t0818400-01	Rice	nucleus	99.26	95.07
Bra005745.1-P	Field mustard	cytosol, mitochondrion	94.85	94.85
KRH24942	Soybean	cytosol	87.5	92.97
Solyc10g086020.1.1	Tomato	plastid	97.06	92.96
PGSC0003DMT400004414	Potato	mitochondrion	97.06	92.96
PGSC0003DMT400027147	Potato	mitochondrion	97.06	92.96
PGSC0003DMT400045338	Potato	extracellular	97.06	92.96
PGSC0003DMT400065339	Potato	mitochondrion	97.06	92.96
Solyc09g007350.2.1	Tomato	mitochondrion	97.06	92.96
Solyc10g084310.1.1	Tomato	mitochondrion	97.06	92.96
VIT_08s0040g02420.t01	Wine grape	mitochondrion	97.06	92.96
VIT_13s0019g03640.t01	Wine grape	mitochondrion	96.32	92.25
KRH67642	Soybean	mitochondrion	96.32	92.25
KRH32405	Soybean	nucleus	96.32	92.25
AT5G02960.1	Thale cress	mitochondrion	96.32	92.25
KRG95930	Soybean	mitochondrion	96.32	92.25
Bra028856.1-P	Field mustard	mitochondrion	95.59	91.55
Bra001300.1-P	Field mustard	mitochondrion	95.59	91.55
KRH19812	Soybean	nucleus	95.59	91.55
AT3G09680.1	Thale cress	mitochondrion	93.38	89.44
KRG89057	Soybean	mitochondrion	80.15	88.62
HORVU5Hr1G112390.2	Barley	mitochondrion	99.26	87.1
Solyc11g013160.1.1	Tomato	cytosol	38.97	86.89
CDY72262	Canola	cytosol	27.94	80.85
VIT_06s0004g03410.t01	Wine grape	cytosol	96.32	80.37
Bra003985.1-P	Field mustard	mitochondrion	83.09	79.58
CDY62061	Canola	mitochondrion	83.09	78.47
CDY70106	Canola	mitochondrion	81.62	77.08
Zm00001d028137_P001	Maize	cytosol	28.68	76.47
CDX84175	Canola	cytosol	48.53	75.86
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	36.03	75.38
CDY37167	Canola	mitochondrion	57.35	73.58
Solyc06g011510.1.1	Tomato	cytosol	26.47	72.0
CDY10413	Canola	mitochondrion	95.59	71.43
Bra022086.1-P	Field mustard	cytosol	59.56	70.43
CDY72261	Canola	mitochondrion	26.47	66.67
CDY43631	Canola	cytosol	49.26	66.34
CDY71254	Canola	plastid	60.29	64.57
Zm00001d036211_P001	Maize	endoplasmic reticulum	47.79	59.09
CDY01752	Canola	vacuole	82.35	57.73
CDY22194	Canola	endoplasmic reticulum	95.59	55.56
CDY41304	Canola	endoplasmic reticulum	95.59	55.56
Bra034077.1-P	Field mustard	endoplasmic reticulum	95.59	50.39
KRH55344	Soybean	cytosol	53.68	50.34
Zm00001d044342_P002	Maize	cytosol, mitochondrion	65.44	37.71
Zm00001d018970_P001	Maize	cytosol	48.53	26.09
Zm00001d048114_P001	Maize	cytosol	76.47	20.31

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	ProteinID:AQK62016.1	UniProt:B4FMD3	EMBL:BT038271	EMBL:BT055009
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0030529	InterPro:NA-bd_OB-fold	ProteinID:ONM36623.1
PFAM:PF00164	PIRSF:PIRSF002133	ScanProsite:PS00055	PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23
InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249	TIGRFAMs:TIGR00982	UniParc:UPI00017B6CB4	EnsemblPlantsGene:Zm00001d012978	EnsemblPlants:Zm00001d012978_P001
EnsemblPlants:Zm00001d012978_T001	:	:	:	:	:

Description

40S ribosomal protein S23-2

Coordinates

chr5:+:2663422..2665225

Molecular Weight (calculated)

15046.5 Da

IEP (calculated)

11.007

GRAVY (calculated)

-0.557

Length

136 amino acids

Sequence
(BLAST)

001: MGAGRKLKTH RRNQRWADKA YKKSHLGNEW KKPFAGSSHA KGIVLEKIGI EAKQPNSAIR KCARVQLVKN GKKIAAFVPN DGCLNYIEEN DEVLIAGFGR
101: KGHAVGDIPG VRFKVVKVSG VSLLALFKEK KEKPRS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.