CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70336	Canola	cytosol, mitochondrion	100.0	100.0
CDX73991	Canola	cytosol, mitochondrion	100.0	100.0
CDX80847	Canola	cytosol, mitochondrion	100.0	100.0
CDY55693	Canola	cytosol, mitochondrion	100.0	100.0
CDY04874	Canola	cytosol, mitochondrion	100.0	100.0
CDY07936	Canola	cytosol, mitochondrion	100.0	100.0
Bra005745.1-P	Field mustard	cytosol, mitochondrion	99.26	99.26
Zm00001d012978_P001	Maize	extracellular	95.59	95.59
AT5G02960.1	Thale cress	mitochondrion	99.26	95.07
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	94.85	94.85
Zm00001d010566_P001	Maize	plasma membrane	95.59	91.55
PGSC0003DMT400004414	Potato	mitochondrion	95.59	91.55
EES19663	Sorghum	mitochondrion	95.59	91.55
EES03842	Sorghum	mitochondrion	95.59	91.55
EER90632	Sorghum	mitochondrion	95.59	91.55
PGSC0003DMT400027147	Potato	mitochondrion	95.59	91.55
PGSC0003DMT400045338	Potato	extracellular	95.59	91.55
Solyc09g007350.2.1	Tomato	mitochondrion	95.59	91.55
Solyc10g084310.1.1	Tomato	mitochondrion	95.59	91.55
Zm00001d042966_P001	Maize	mitochondrion	95.59	91.55
Solyc10g086020.1.1	Tomato	plastid	95.59	91.55
VIT_13s0019g03640.t01	Wine grape	mitochondrion	95.59	91.55
Zm00001d034628_P001	Maize	mitochondrion	95.59	91.55
PGSC0003DMT400065339	Potato	mitochondrion	95.59	91.55
KRH24942	Soybean	cytosol	86.03	91.41
Os03t0818400-01	Rice	nucleus	94.85	90.85
KRG95930	Soybean	mitochondrion	94.85	90.85
KRH32405	Soybean	nucleus	94.85	90.85
KRH67642	Soybean	mitochondrion	94.85	90.85
Os01t0834500-01	Rice	mitochondrion	94.85	90.85
VIT_08s0040g02420.t01	Wine grape	mitochondrion	94.85	90.85
KRH19812	Soybean	nucleus	94.12	90.14
HORVU1Hr1G071570.3	Barley	mitochondrion	94.85	89.58
KRG89057	Soybean	mitochondrion	78.68	86.99
Os10t0350001-00	Rice	cytosol, extracellular	28.68	86.67
Solyc11g013160.1.1	Tomato	cytosol	38.24	85.25
HORVU5Hr1G112390.2	Barley	mitochondrion	94.85	83.23
VIT_06s0004g03410.t01	Wine grape	cytosol	95.59	79.75
CDY72262	Canola	cytosol	27.21	78.72
CDY62061	Canola	mitochondrion	82.35	77.78
CDY70106	Canola	mitochondrion	80.88	76.39
CDY10413	Canola	mitochondrion	100.0	74.73
CDX84175	Canola	cytosol	47.79	74.71
Zm00001d028137_P001	Maize	cytosol	27.94	74.51
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	61.76	73.68
CDY37167	Canola	mitochondrion	56.62	72.64
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	34.56	72.31
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	94.85	72.07
Solyc06g011510.1.1	Tomato	cytosol	26.47	72.0
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	94.85	71.27
GSMUA_Achr2P23030_001	Banana	mitochondrion	94.85	70.11
CDY71254	Canola	plastid	64.71	69.29
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	94.85	68.62
CDY72261	Canola	mitochondrion	26.47	66.67
CDY43631	Canola	cytosol	48.53	65.35
GSMUA_Achr2P22920_001	Banana	mitochondrion	82.35	64.74
CDY41304	Canola	endoplasmic reticulum	100.0	58.12
CDY22194	Canola	endoplasmic reticulum	100.0	58.12
CDY01752	Canola	vacuole	80.15	56.19
Zm00001d036211_P001	Maize	endoplasmic reticulum	44.12	54.55
HORVU6Hr1G043260.1	Barley	mitochondrion	33.09	51.14
KRH55344	Soybean	cytosol	52.21	48.97
Os10t0350450-00	Rice	mitochondrion	61.03	44.62
Zm00001d044342_P002	Maize	cytosol, mitochondrion	61.03	35.17
Zm00001d018970_P001	Maize	cytosol	47.06	25.3
Zm00001d048114_P001	Maize	cytosol	74.26	19.73

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	GO:A0A078CVS8	UniProt:A0A078CVS8	ProteinID:CDY07936.1	EnsemblPlants:CDY11236
ProteinID:CDY11236	ProteinID:CDY11236.1	ProteinID:CDY55693.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538
GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00049257001	InterPro:NA-bd_OB-fold	PFAM:PF00164	PIRSF:PIRSF002133	ScanProsite:PS00055
PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249	TIGRFAMs:TIGR00982
UniParc:UPI0002547C32	:	:	:	:	:

Description

BnaA03g00720DBnaA03g00720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078CVS8]

Coordinates

chrLK032010:-:309484..310738

Molecular Weight (calculated)

15120.6 Da

IEP (calculated)

11.007

GRAVY (calculated)

-0.558

Length

136 amino acids

Sequence
(BLAST)

001: MGAGRKLKRL RINQRWADKQ YKKSHQGNEW KKPFAGSSHA KGIVLEKIGI EAKQPNSAIR KCARVQLIKN GKKIAAFVPN DGCLNYIEEN DEVLIAGFGR
101: KGHAVGDIPG VRFKVVKVSG VSLLALFKEK KEKPRS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.