Factsheet for GSMUA_Achr2P22920_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	68.79	87.5
VIT_08s0040g02420.t01	Wine grape	mitochondrion	69.94	85.21
Solyc10g086020.1.1	Tomato	plastid	69.94	85.21
Solyc10g084310.1.1	Tomato	mitochondrion	69.94	85.21
Solyc09g007350.2.1	Tomato	mitochondrion	69.94	85.21
PGSC0003DMT400065339	Potato	mitochondrion	69.94	85.21
PGSC0003DMT400045338	Potato	extracellular	69.94	85.21
PGSC0003DMT400027147	Potato	mitochondrion	69.94	85.21
PGSC0003DMT400004414	Potato	mitochondrion	69.94	85.21
VIT_13s0019g03640.t01	Wine grape	mitochondrion	69.36	84.51
KRH19812	Soybean	nucleus	69.36	84.51
KRH67642	Soybean	mitochondrion	68.79	83.8
KRH32405	Soybean	nucleus	68.79	83.8
KRG95930	Soybean	mitochondrion	68.79	83.8
AT5G02960.1	Thale cress	mitochondrion	68.21	83.1
Bra028856.1-P	Field mustard	mitochondrion	67.63	82.39
Bra001300.1-P	Field mustard	mitochondrion	67.63	82.39
CDY04874	Canola	cytosol, mitochondrion	64.74	82.35
CDX70336	Canola	cytosol, mitochondrion	64.74	82.35
CDX73991	Canola	cytosol, mitochondrion	64.74	82.35
CDX80847	Canola	cytosol, mitochondrion	64.74	82.35
Bra009557.1-P	Field mustard	cytosol, mitochondrion	64.74	82.35
CDY55693	Canola	cytosol, mitochondrion	64.74	82.35
CDY07936	Canola	cytosol, mitochondrion	64.74	82.35
CDY11236	Canola	cytosol, mitochondrion	64.74	82.35
AT3G09680.1	Thale cress	mitochondrion	67.05	81.69
Bra005745.1-P	Field mustard	cytosol, mitochondrion	64.16	81.62
KRH24942	Soybean	cytosol	59.54	80.47
KRG89057	Soybean	mitochondrion	56.07	78.86
Solyc11g013160.1.1	Tomato	cytosol	26.59	75.41
Bra003985.1-P	Field mustard	mitochondrion	60.69	73.94
VIT_06s0004g03410.t01	Wine grape	cytosol	68.79	73.01
CDY62061	Canola	mitochondrion	60.12	72.22
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	72.83	70.39
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	73.41	70.17
CDY70106	Canola	mitochondrion	58.38	70.14
GSMUA_Achr2P23030_001	Banana	mitochondrion	74.57	70.11
Solyc06g011510.1.1	Tomato	cytosol	20.23	70.0
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	26.01	69.23
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	44.51	67.54
CDY10413	Canola	mitochondrion	67.63	64.29
CDY72261	Canola	mitochondrion	19.08	61.11
CDY37167	Canola	mitochondrion	36.99	60.38
CDY71254	Canola	plastid	43.93	59.84
CDX84175	Canola	cytosol	30.06	59.77
CDY72262	Canola	cytosol	16.18	59.57
Bra022086.1-P	Field mustard	cytosol	38.73	58.26
CDY43631	Canola	cytosol	31.21	53.47
CDY01752	Canola	vacuole	58.96	52.58
CDY41304	Canola	endoplasmic reticulum	68.79	50.85
CDY22194	Canola	endoplasmic reticulum	68.79	50.85
Bra034077.1-P	Field mustard	endoplasmic reticulum	68.79	46.12
KRH55344	Soybean	cytosol	37.57	44.83

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0030529
EnsemblPlantsGene:GSMUA_Achr2G22920_001	EnsemblPlants:GSMUA_Achr2P22920_001	EnsemblPlants:GSMUA_Achr2T22920_001	UniProt:M0SAD3	InterPro:NA-bd_OB-fold	PFAM:PF00164
PIRSF:PIRSF002133	PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249
TIGRFAMs:TIGR00982	UniParc:UPI0002966F58	:	:	:	:

Description

40S ribosomal protein S23 [Source:GMGC_GENE;Acc:GSMUA_Achr2G22920_001]

Coordinates

chr2:-:21831264..21833334

Molecular Weight (calculated)

19707.2 Da

IEP (calculated)

10.803

GRAVY (calculated)

-0.565

Length

173 amino acids

Sequence
(BLAST)

001: MERLGLPPHP RFRILRISRR GKRASASDDT GKTRGMGSGR KLKTHRRRQR WADKAYEKSH LGNEWKKTLC WFFACQWYCP IVLEKIGIEA KQPNSAIQKC
101: ARVQLIKNGK KITAFVPNDG CLNFIEENDE VLIAGFGRKG HADGDIPGVR FKVVKVCGVS LLALFKEKEK PRC

Best Arabidopsis Sequence Match ( AT3G09680.1 )
(BLAST)

001: MGKTRGMGAG RKLKQLRITQ RWADKHYKKS NRGNEWKKPF ACSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23A40S ribosomal protein S23-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF35]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.