Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g005110.2.1 | Tomato | mitochondrion, nucleus | 43.86 | 76.92 |
| CDY72262 | Canola | cytosol | 31.58 | 76.6 |
| KRG89057 | Soybean | mitochondrion | 75.44 | 69.92 |
| GSMUA_Achr10P... | Banana | cytosol, mitochondrion | 79.82 | 66.91 |
| CDY71254 | Canola | plastid | 69.3 | 62.2 |
| EER90632 | Sorghum | mitochondrion | 77.19 | 61.97 |
| Solyc10g086020.1.1 | Tomato | plastid | 77.19 | 61.97 |
| Solyc10g084310.1.1 | Tomato | mitochondrion | 77.19 | 61.97 |
| Solyc09g007350.2.1 | Tomato | mitochondrion | 77.19 | 61.97 |
| VIT_08s0040g02420.t01 | Wine grape | mitochondrion | 77.19 | 61.97 |
| PGSC0003DMT400065339 | Potato | mitochondrion | 77.19 | 61.97 |
| PGSC0003DMT400045338 | Potato | extracellular | 77.19 | 61.97 |
| PGSC0003DMT400004414 | Potato | mitochondrion | 77.19 | 61.97 |
| PGSC0003DMT400027147 | Potato | mitochondrion | 77.19 | 61.97 |
| CDY07936 | Canola | cytosol, mitochondrion | 73.68 | 61.76 |
| CDY55693 | Canola | cytosol, mitochondrion | 73.68 | 61.76 |
| CDY11236 | Canola | cytosol, mitochondrion | 73.68 | 61.76 |
| CDY04874 | Canola | cytosol, mitochondrion | 73.68 | 61.76 |
| CDX80847 | Canola | cytosol, mitochondrion | 73.68 | 61.76 |
| CDX73991 | Canola | cytosol, mitochondrion | 73.68 | 61.76 |
| CDX70336 | Canola | cytosol, mitochondrion | 73.68 | 61.76 |
| Bra009557.1-P | Field mustard | cytosol, mitochondrion | 73.68 | 61.76 |
| KRH67642 | Soybean | mitochondrion | 76.32 | 61.27 |
| KRH32405 | Soybean | nucleus | 76.32 | 61.27 |
| KRG95930 | Soybean | mitochondrion | 76.32 | 61.27 |
| VIT_13s0019g03640.t01 | Wine grape | mitochondrion | 76.32 | 61.27 |
| Bra005745.1-P | Field mustard | cytosol, mitochondrion | 72.81 | 61.03 |
| KRH19812 | Soybean | nucleus | 75.44 | 60.56 |
| KRH24942 | Soybean | cytosol | 67.54 | 60.16 |
| AT5G02960.1 | Thale cress | mitochondrion | 74.56 | 59.86 |
| Bra001300.1-P | Field mustard | mitochondrion | 73.68 | 59.15 |
| Bra028856.1-P | Field mustard | mitochondrion | 73.68 | 59.15 |
| Solyc11g013160.1.1 | Tomato | cytosol | 31.58 | 59.02 |
| AT3G09680.1 | Thale cress | mitochondrion | 71.93 | 57.75 |
| HORVU5Hr1G112390.2 | Barley | mitochondrion | 78.07 | 57.42 |
| Zm00001d036211_P001 | Maize | endoplasmic reticulum | 55.26 | 57.27 |
| VIT_06s0004g03410.t01 | Wine grape | cytosol | 76.32 | 53.37 |
| Bra003985.1-P | Field mustard | mitochondrion | 65.79 | 52.82 |
| CDY62061 | Canola | mitochondrion | 65.79 | 52.08 |
| GSMUA_Achr3P01170_001 | Banana | mitochondrion, plastid | 79.82 | 50.84 |
| CDY70106 | Canola | mitochondrion | 64.04 | 50.69 |
| GSMUA_Achr5P14800_001 | Banana | cytosol, mitochondrion | 79.82 | 50.28 |
| KRH55344 | Soybean | cytosol | 63.16 | 49.66 |
| GSMUA_Achr2P23030_001 | Banana | mitochondrion | 79.82 | 49.46 |
| CDY10413 | Canola | mitochondrion | 73.68 | 46.15 |
| Os10t0350450-00 | Rice | mitochondrion | 72.81 | 44.62 |
| GSMUA_Achr2P22920_001 | Banana | mitochondrion | 67.54 | 44.51 |
| CDY37167 | Canola | mitochondrion | 40.35 | 43.4 |
| Bra022086.1-P | Field mustard | cytosol | 42.11 | 41.74 |
| Solyc06g011510.1.1 | Tomato | cytosol | 16.67 | 38.0 |
| CDX84175 | Canola | cytosol | 28.95 | 37.93 |
| CDY01752 | Canola | vacuole | 63.16 | 37.11 |
| CDY22194 | Canola | endoplasmic reticulum | 73.68 | 35.9 |
| CDY41304 | Canola | endoplasmic reticulum | 73.68 | 35.9 |
| CDY43631 | Canola | cytosol | 30.7 | 34.65 |
| Zm00001d044342_P002 | Maize | cytosol, mitochondrion | 69.3 | 33.47 |
| Bra034077.1-P | Field mustard | endoplasmic reticulum | 73.68 | 32.56 |
| CDY72261 | Canola | mitochondrion | 4.39 | 9.26 |
Protein Annotations
| MapMan:17.1.3.1.24 | Gene3D:2.40.50.140 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr4G17160_001 | EnsemblPlants:GSMUA_Achr4P17160_001 |
| EnsemblPlants:GSMUA_Achr4T17160_001 | UniProt:M0SPM9 | InterPro:NA-bd_OB-fold | PFAM:PF00164 | ScanProsite:PS00055 | PANTHER:PTHR11652 |
| PANTHER:PTHR11652:SF37 | InterPro:Ribosomal_S12/S23 | SUPFAM:SSF50249 | UniParc:UPI000295E31B | : | : |
Description
40S ribosomal protein S23 [Source:GMGC_GENE;Acc:GSMUA_Achr4G17160_001]
Coordinates
chr4:+:16389470..16390284
Molecular Weight (calculated)
13113.1 Da
IEP (calculated)
11.302
GRAVY (calculated)
-0.640
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGRKLKTH RRRQRWADKA YKKSHLGNEW KKPFAGSSHA KGIVLEKIRI EAKQPNSAIR KCARVQLIKN GKKIAAFVPN DGCLNFMEEN CKLFLISDAR
101: AMRWVTFLES GSRW
101: AMRWVTFLES GSRW
001: MGKTRGMGAG RKLKQLRITQ RWADKHYKKS NRGNEWKKPF ACSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
Arabidopsis Description
RPS23A40S ribosomal protein S23-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF35]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.