CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70336	Canola	cytosol, mitochondrion	58.12	100.0
CDX73991	Canola	cytosol, mitochondrion	58.12	100.0
CDX80847	Canola	cytosol, mitochondrion	58.12	100.0
CDY04874	Canola	cytosol, mitochondrion	58.12	100.0
CDY07936	Canola	cytosol, mitochondrion	58.12	100.0
CDY55693	Canola	cytosol, mitochondrion	58.12	100.0
CDY11236	Canola	cytosol, mitochondrion	58.12	100.0
CDY22194	Canola	endoplasmic reticulum	100.0	100.0
PGSC0003DMT400065339	Potato	mitochondrion	58.12	95.77
Solyc10g084310.1.1	Tomato	mitochondrion	58.12	95.77
Solyc09g007350.2.1	Tomato	mitochondrion	58.12	95.77
EER90632	Sorghum	mitochondrion	58.12	95.77
EES03842	Sorghum	mitochondrion	58.12	95.77
EES19663	Sorghum	mitochondrion	58.12	95.77
AT3G09680.1	Thale cress	mitochondrion	58.12	95.77
PGSC0003DMT400045338	Potato	extracellular	58.12	95.77
PGSC0003DMT400027147	Potato	mitochondrion	58.12	95.77
PGSC0003DMT400004414	Potato	mitochondrion	58.12	95.77
Solyc10g086020.1.1	Tomato	plastid	58.12	95.77
Zm00001d042966_P001	Maize	mitochondrion	58.12	95.77
Zm00001d034628_P001	Maize	mitochondrion	58.12	95.77
Zm00001d010566_P001	Maize	plasma membrane	58.12	95.77
VIT_13s0019g03640.t01	Wine grape	mitochondrion	58.12	95.77
Zm00001d012978_P001	Maize	extracellular	55.56	95.59
VIT_08s0040g02420.t01	Wine grape	mitochondrion	57.69	95.07
Os03t0818400-01	Rice	nucleus	57.69	95.07
Os01t0834500-01	Rice	mitochondrion	57.69	95.07
GSMUA_Achr10P...	Banana	cytosol, mitochondrion	55.13	94.85
KRH67642	Soybean	mitochondrion	57.27	94.37
KRH32405	Soybean	nucleus	57.27	94.37
KRG95930	Soybean	mitochondrion	57.27	94.37
KRH19812	Soybean	nucleus	56.84	93.66
HORVU1Hr1G071570.3	Barley	mitochondrion	56.84	92.36
CDY71254	Canola	plastid	50.0	92.13
KRH24942	Soybean	cytosol	50.0	91.41
KRG89057	Soybean	mitochondrion	47.44	90.24
Bra034077.1-P	Field mustard	endoplasmic reticulum	97.86	88.76
Os10t0350001-00	Rice	cytosol, extracellular	16.67	86.67
HORVU5Hr1G112390.2	Barley	mitochondrion	57.27	86.45
Solyc11g013160.1.1	Tomato	cytosol	22.22	85.25
VIT_06s0004g03410.t01	Wine grape	cytosol	58.55	84.05
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	22.65	81.54
CDY62061	Canola	mitochondrion	49.57	80.56
CDY10413	Canola	mitochondrion	62.39	80.22
CDY72262	Canola	cytosol	15.81	78.72
CDY70106	Canola	mitochondrion	48.29	78.47
GSMUA_Achr3P01170_001	Banana	mitochondrion, plastid	58.55	76.54
GSMUA_Achr5P14800_001	Banana	cytosol, mitochondrion	58.55	75.69
GSMUA_Achr2P23030_001	Banana	mitochondrion	58.97	75.0
CDX84175	Canola	cytosol	27.78	74.71
Zm00001d028137_P001	Maize	cytosol	16.24	74.51
GSMUA_Achr4P17160_001	Banana	cytosol, mitochondrion	35.9	73.68
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	58.97	73.4
CDY37167	Canola	mitochondrion	32.91	72.64
Solyc06g011510.1.1	Tomato	cytosol	15.38	72.0
GSMUA_Achr2P22920_001	Banana	mitochondrion	50.85	68.79
CDY72261	Canola	mitochondrion	15.38	66.67
CDY43631	Canola	cytosol	28.21	65.35
CDY01752	Canola	vacuole	50.43	60.82
Zm00001d036211_P001	Maize	endoplasmic reticulum	28.21	60.0
HORVU6Hr1G043260.1	Barley	mitochondrion	20.51	54.55
KRH55344	Soybean	cytosol	31.62	51.03
Os10t0350450-00	Rice	mitochondrion	39.74	50.0
Zm00001d044342_P002	Maize	cytosol, mitochondrion	35.47	35.17
Zm00001d018970_P001	Maize	cytosol	29.49	27.27
Zm00001d048114_P001	Maize	cytosol	48.29	22.07

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	GO:A0A078HVB5	UniProt:A0A078HVB5	ProteinID:CDY22194.1	EnsemblPlants:CDY41304
ProteinID:CDY41304	ProteinID:CDY41304.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00072852001
InterPro:NA-bd_OB-fold	PFAM:PF00164	ScanProsite:PS00055	PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	InterPro:Ribosomal_S12/S23
InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249	TIGRFAMs:TIGR00982	TMHMM:TMhelix	UniParc:UPI0004EF2E1E	SEG:seg

Description

BnaA01g32150DBnaA01g32150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVB5]

Coordinates

chrLK032495:-:29353..30865

Molecular Weight (calculated)

25922.1 Da

IEP (calculated)

10.791

GRAVY (calculated)

-0.124

Length

234 amino acids

Sequence
(BLAST)

001: MDELLHLCFV LFFLIGCTKL ILTVRSNIAF NENGQTCMSC YRRRGPAEPV ACRALSLCFA FGRVVGVVGA RTQRSNLSQL QLLCSVYLAV VNMGKTRGMG
101: AGRKLKRLRI NQRWADKQYK KSHQGNEWKK PFAGSSHAKG IVLEKIGIEA KQPNSAIRKC ARVQLIKNGK KIAAFVPNDG CLNYIEENDE VLIAGFGRKG
201: HAVGDIPGVR FKVVKVSGVS LLALFKEKKE KPRS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.