Factsheet for Os01t0834500-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0818400-01	Rice	nucleus	100.0	100.0
Zm00001d042966_P001	Maize	mitochondrion	99.3	99.3
EES03842	Sorghum	mitochondrion	99.3	99.3
VIT_08s0040g02420.t01	Wine grape	mitochondrion	96.48	96.48
Solyc10g086020.1.1	Tomato	plastid	96.48	96.48
Solyc10g084310.1.1	Tomato	mitochondrion	96.48	96.48
Solyc09g007350.2.1	Tomato	mitochondrion	96.48	96.48
PGSC0003DMT400065339	Potato	mitochondrion	96.48	96.48
PGSC0003DMT400045338	Potato	extracellular	96.48	96.48
PGSC0003DMT400027147	Potato	mitochondrion	96.48	96.48
PGSC0003DMT400004414	Potato	mitochondrion	96.48	96.48
AT5G02960.1	Thale cress	mitochondrion	95.77	95.77
VIT_13s0019g03640.t01	Wine grape	mitochondrion	95.77	95.77
Bra001300.1-P	Field mustard	mitochondrion	95.07	95.07
Bra028856.1-P	Field mustard	mitochondrion	95.07	95.07
KRH67642	Soybean	mitochondrion	95.07	95.07
KRH32405	Soybean	nucleus	95.07	95.07
KRG95930	Soybean	mitochondrion	95.07	95.07
CDY04874	Canola	cytosol, mitochondrion	90.85	94.85
CDY07936	Canola	cytosol, mitochondrion	90.85	94.85
CDY11236	Canola	cytosol, mitochondrion	90.85	94.85
Bra009557.1-P	Field mustard	cytosol, mitochondrion	90.85	94.85
CDX70336	Canola	cytosol, mitochondrion	90.85	94.85
CDY55693	Canola	cytosol, mitochondrion	90.85	94.85
CDX73991	Canola	cytosol, mitochondrion	90.85	94.85
CDX80847	Canola	cytosol, mitochondrion	90.85	94.85
KRH19812	Soybean	nucleus	94.37	94.37
Bra005745.1-P	Field mustard	cytosol, mitochondrion	90.14	94.12
AT3G09680.1	Thale cress	mitochondrion	92.96	92.96
KRH24942	Soybean	cytosol	83.1	92.19
KRG89057	Soybean	mitochondrion	78.87	91.06
Os10t0350001-00	Rice	cytosol, extracellular	27.46	86.67
Solyc11g013160.1.1	Tomato	cytosol	36.62	85.25
Solyc06g005110.2.1	Tomato	mitochondrion, nucleus	38.73	84.62
Bra003985.1-P	Field mustard	mitochondrion	83.8	83.8
VIT_06s0004g03410.t01	Wine grape	cytosol	94.37	82.21
CDY62061	Canola	mitochondrion	82.39	81.25
CDY72262	Canola	cytosol	26.76	80.85
CDY70106	Canola	mitochondrion	80.28	79.17
CDX84175	Canola	cytosol	46.48	75.86
HORVU3Hr1G087380.1	Barley	mitochondrion, plastid	100.0	75.53
CDY10413	Canola	mitochondrion	95.07	74.18
CDY37167	Canola	mitochondrion	54.93	73.58
Bra022086.1-P	Field mustard	cytosol	57.04	70.43
Solyc06g011510.1.1	Tomato	cytosol	24.65	70.0
CDY72261	Canola	mitochondrion	26.06	68.52
CDY71254	Canola	plastid	61.27	68.5
CDY43631	Canola	cytosol	47.89	67.33
CDY01752	Canola	vacuole	83.1	60.82
CDY22194	Canola	endoplasmic reticulum	95.07	57.69
CDY41304	Canola	endoplasmic reticulum	95.07	57.69
Bra034077.1-P	Field mustard	endoplasmic reticulum	95.07	52.33
Os10t0350450-00	Rice	mitochondrion	65.49	50.0
KRH55344	Soybean	cytosol	50.7	49.66

Protein Annotations

MapMan:17.1.3.1.24	Gene3D:2.40.50.140	EntrezGene:4327414	EntrezGene:4334580	EntrezGene:9266509	ProteinID:AAO60034.1
ProteinID:AAO65856.1	ProteinID:ABF99566.1	EMBL:AK069399	EMBL:AK102675	ProteinID:BAB92932.1	ProteinID:BAB92933.1
ProteinID:BAC02683.1	ProteinID:BAC02684.1	ProteinID:BAF06634.1	ProteinID:BAF13622.1	ProteinID:BAH91367.1	ProteinID:BAS75092.1
ProteinID:BAS87068.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015935	GO:GO:0019538	GO:GO:0022627
InterPro:NA-bd_OB-fold	EnsemblPlantsGene:Os01g0834500	EnsemblPlants:Os01t0834500-01	PFAM:PF00164	PIRSF:PIRSF002133	ScanProsite:PS00055
PANTHER:PTHR11652	PANTHER:PTHR11652:SF37	UniProt:Q8L4F2	InterPro:Ribosomal_S12/S23	InterPro:Ribosomal_S23_euk/arc	SUPFAM:SSF50249
TIGRFAMs:TIGR00982	UniParc:UPI0000002C9C	RefSeq:XP_015611534.1	RefSeq:XP_015611545.1	RefSeq:XP_015629855.1	:

Description

Similar to 40S ribosomal protein S23 (S12). (Os01t0834500-01)

Coordinates

chr1:-:35760071..35761608

Molecular Weight (calculated)

15661.3 Da

IEP (calculated)

11.188

GRAVY (calculated)

-0.561

Length

142 amino acids

Sequence
(BLAST)

001: MGKTRGMGAG RKLKTHRRNQ RWADKAYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLVKNGKKI AAFVPNDGCL NFIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Best Arabidopsis Sequence Match ( AT5G02960.1 )
(BLAST)

001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS

Arabidopsis Description

RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.