Factsheet for VIT_07s0005g01000.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 2
mitochondrion 5
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03370.t01
VIT_01s0010g03380.t01
VIT_04s0008g06220.t01
VIT_04s0023g03210.t01
VIT_05s0051g00300.t01
VIT_05s0077g01840.t01
VIT_05s0136g00290.t01
VIT_07s0005g00840.t01
VIT_07s0151g00900.t01
VIT_08s0007g06790.t01
VIT_10s0003g01520.t01
VIT_10s0003g02590.t01
VIT_11s0118g00680.t01
VIT_12s0034g01000.t01
VIT_12s0059g00190.t01
VIT_13s0019g00800.t01
VIT_14s0030g01620.t01
VIT_17s0000g01520.t01
VIT_18s0001g05140.t01
VIT_18s0001g14500.t01
VIT_18s0001g15600.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02195.1	VIT_05s0077g01840.t01	AT1G02780.1	24556609
AT4G02195.1	VIT_07s0005g00840.t01	AT1G02780.1	24556609
AT4G02195.1	VIT_05s0136g00290.t01	AT1G04750.1	24556609
AT4G02195.1	VIT_12s0034g01000.t01	AT1G25260.1	24556609
AT4G02195.1	VIT_01s0010g03370.t01	AT1G27400.1	24556609
AT4G02195.1	VIT_01s0010g03380.t01	AT1G27400.1	24556609
AT4G02195.1	VIT_17s0000g01520.t01	AT1G27400.1	24556609
AT4G02195.1	VIT_18s0001g05140.t01	AT1G27400.1	24556609
AT4G02195.1	VIT_05s0051g00300.t01	AT1G72900.1	24556609
AT4G02195.1	VIT_18s0001g15600.t01	AT1G77140.1	10888666
AT4G02195.1	VIT_18s0001g15600.t01	AT1G77140.1	24556609
AT4G02195.1	VIT_04s0023g03210.t01	AT2G18020.1	24556609
AT4G02195.1	VIT_13s0019g00800.t01	AT2G28740.1	24556609
AT4G02195.1	VIT_10s0003g01520.t01	AT2G42740.1	24556609
AT4G02195.1	VIT_07s0151g00900.t01	AT3G04920.1	24556609
AT4G02195.1	VIT_14s0030g01620.t01	AT3G04920.1	24556609
AT4G02195.1	VIT_08s0007g06790.t01	AT3G12030.1	24556609
AT4G02195.1	VIT_04s0008g06220.t01	AT3G48930.1	24556609
AT4G02195.1	VIT_11s0118g00680.t01	AT3G48930.1	24556609
AT4G02195.1	VIT_10s0003g02590.t01	AT4G18060.1	24556609
AT4G02195.1	VIT_18s0001g14500.t01	AT4G24190.1	24556609
AT4G02195.1	VIT_12s0059g00190.t01	AT4G28250.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0060g01540.t01	Wine grape	mitochondrion	80.82	78.59
TraesCS7D01G044300.1	Wheat	cytosol	55.35	73.95
Zm00001d013996_P003	Maize	mitochondrion	73.58	73.12
Zm00001d039404_P001	Maize	plasma membrane	74.21	73.06
KRH68233	Soybean	plastid	73.27	72.81
KRG96492	Soybean	plastid	73.9	72.53
OQU86127	Sorghum	mitochondrion	74.21	72.39
Os06t0116300-01	Rice	plasma membrane	74.53	71.82
GSMUA_Achr11P...	Banana	mitochondrion	72.96	71.38
TraesCS7A01G049200.1	Wheat	mitochondrion	72.33	70.12
GSMUA_Achr10P...	Banana	mitochondrion	72.33	69.7
Solyc09g075530.2.1	Tomato	cytosol, mitochondrion	69.5	69.28
CDY22037	Canola	mitochondrion	70.13	69.25
AT4G02195.1	Thale cress	cytosol, mitochondrion, plastid	69.5	68.42
Bra036287.1-P	Field mustard	cytosol, mitochondrion	61.95	68.4
GSMUA_Achr4P18460_001	Banana	mitochondrion	71.7	68.06
CDY52786	Canola	mitochondrion	68.87	68.01
Zm00001d045530_P001	Maize	cytosol	18.87	66.67
CDX97432	Canola	extracellular, vacuole	5.35	65.38
EER87742	Sorghum	mitochondrion	47.8	63.87
HORVU7Hr1G008670.5	Barley	mitochondrion	72.33	63.54
PGSC0003DMT400081334	Potato	mitochondrion	63.21	62.81
TraesCS4A01G435000.1	Wheat	mitochondrion	64.47	62.5
HORVU7Hr1G008640.2	Barley	mitochondrion	44.65	54.62

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	EntrezGene:100248594	wikigene:100248594	MapMan:22.7.1.4	EMBL:AM441647
ProteinID:CAN62995	ProteinID:CAN62995.1	ProteinID:CBI36910	ProteinID:CBI36910.3	ncoils:Coil	UniProt:D7U2E4
EMBL:FN596502	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005802
GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0006950	GO:GO:0007030	GO:GO:0007034
GO:GO:0008150	GO:GO:0009306	GO:GO:0009605	GO:GO:0009607	GO:GO:0009987	GO:GO:0012505
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048278
GO:GO:0061025	GO:GO:1900150	InterPro:IPR000727	EntrezGene:LOC100248594	wikigene:LOC100248594	PFAM:PF05739
ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF83	SMART:SM00397	SMART:SM00503
InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom
UniParc:UPI00015CB018	ArrayExpress:VIT_07s0005g01000	EnsemblPlantsGene:VIT_07s0005g01000	EnsemblPlants:VIT_07s0005g01000.t01	RefSeq:XP_002273927	RefSeq:XP_002273927.1
RefSeq:XP_010652221.1	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:3575989..3579596

Molecular Weight (calculated)

35838.1 Da

IEP (calculated)

8.215

GRAVY (calculated)

-0.463

Length

318 amino acids

Sequence
(BLAST)

001: MATMNRTVVF RKHRDAVNSV RAPAGVSSGG AVIEMASTSL FHSNRSSYTP LSTEDPGPSS KDAFTVGLPP AWVDVSEEVA ANIQRSRVKM AELVKAQAKA
101: LMPSFEDGKE DQRKIESLTQ EITDLLKRSE KRLQKLSARG PSEDSNVRKN VQRSLATDLQ NLSLELRKRQ STYLKRLRQQ KEGHDGVDLE MNLNENKFRL
201: DDDEFGDMGF NEHQMAKLKK SEKFTAEREK EIRQVVESVN ELAQIMKDLS VLVIDQGTIV DRIDYNIQSV SASVEEGFKQ LEKAERTQRK GGMVTCATIL
301: VIMCFIMLVL LILKEIFL

Best Arabidopsis Sequence Match ( AT5G26980.1 )
(BLAST)

001: MATRNRTLLF RKYRNSLRSV RAPLSSSSLT GTRSGGVGPV IEMASTSLLN PNRSYAPIST EDPGTSSKGA ITVGLPPAWV DVSEEISVNI QRARTKMAEL
101: GKAHAKALMP SFGDGKEDQH NIESLTQEIT FLLKKSEKQL QRLSASGPSE DSNVRKNVQR SLATDLQLLS MELRKKQSTY LKRLRQQKED GMDLEMNLSR
201: NRYRPEEDDF GDMLNEHQMS KIKKSEEVSV EREKEIQQVV ESVNDLAQIM KDLSALVIDQ GTIVDRIDYN IENVATTVED GLKQLQKAER TQRHGGMVKC
301: ASVLVILCFI MLLLLILKEI FL

Arabidopsis Description

SYP41Syntaxin-41 [Source:UniProtKB/Swiss-Prot;Acc:O65359]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.