Factsheet for VIT_12s0034g01000.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061021	Potato	nucleus	82.97	82.97
Solyc01g104470.2.1	Tomato	nucleus	82.53	82.53
KRH10455	Soybean	nucleus	80.35	80.35
KRH43991	Soybean	endoplasmic reticulum	79.91	79.91
Bra012490.1-P	Field mustard	nucleus	78.6	78.6
Bra024770.1-P	Field mustard	nucleus	78.6	78.6
CDY64691	Canola	nucleus	78.6	78.6
Bra010982.1-P	Field mustard	nucleus	78.17	78.17
CDY36122	Canola	nucleus	78.17	78.17
GSMUA_Achr10P...	Banana	nucleus	76.42	77.09
AT1G25260.1	Thale cress	nucleus	74.24	72.34
EES09085	Sorghum	mitochondrion	70.31	69.7
KXG22766	Sorghum	mitochondrion	69.87	69.26
Os11t0105400-01	Rice	nucleus	68.56	67.38
TraesCS5A01G153300.1	Wheat	nucleus	66.81	65.38
TraesCS5D01G158600.1	Wheat	nucleus	66.38	64.96
TraesCS5B01G152500.1	Wheat	nucleus	66.38	64.96
Zm00001d044615_P001	Maize	nucleus	69.0	63.45
Os12t0105200-00	Rice	cytosol, nucleus	66.38	63.33
HORVU5Hr1G047980.5	Barley	cytosol, nucleus	62.88	61.54
Zm00001d005089_P005	Maize	mitochondrion	63.76	61.34
CDY51987	Canola	cytosol, nucleus, plastid	77.73	59.33
GSMUA_Achr4P18800_001	Banana	mitochondrion	34.93	54.05
CDY18189	Canola	cytosol	30.57	52.63
Zm00001d003202_P002	Maize	cytosol	43.23	49.01

Protein Annotations

EntrezGene:100244591	wikigene:100244591	MapMan:17.1.2.2.2.6	Gene3D:3.30.70.1730	Gene3D:3.90.105.20	ProteinID:CBI23879
ProteinID:CBI23879.3	UniProt:D7T050	EMBL:FN595497	GO:GO:0000027	GO:GO:0000956	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043
GO:GO:0042254	EntrezGene:LOC100244591	wikigene:LOC100244591	InterPro:Mrt4	PFAM:PF00466	PANTHER:PTHR21141
PANTHER:PTHR21141:SF37	InterPro:Ribosomal_L10P	SUPFAM:SSF160369	TIGR:TC68846	UniParc:UPI00015CB005	ArrayExpress:VIT_12s0034g01000
EnsemblPlantsGene:VIT_12s0034g01000	EnsemblPlants:VIT_12s0034g01000.t01	RefSeq:XP_002276595	RefSeq:XP_002276595.1	:	:

Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:D7T050]

Coordinates

chr12:+:16837092..16844762

Molecular Weight (calculated)

26375.8 Da

IEP (calculated)

9.556

GRAVY (calculated)

-0.534

Length

229 amino acids

Sequence
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR GHKESIVNSI RQAVENYSSI YVFSFENMRN LKFKEFREKL KSTSRFFLGS NKVMQIAIGR SVADEIRPGL RKVSKLLHGD
101: TGLFFTNLPK EEVQRLFNEY EEYDFARTGS TAVEKVELKE GPLDQFTHEM EPFLRKQGMP VRLNKGVVEL VSDFVVCEEG TPLSPESARI LRLLGIKMAT
201: FRLHLVCRWS PDEFDLYKEG LDDSDVESS

Best Arabidopsis Sequence Match ( AT1G25260.1 )
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS

Arabidopsis Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.