Factsheet for Bra024770.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010982.1-P	Field mustard	nucleus	96.94	96.94
Bra012490.1-P	Field mustard	nucleus	96.94	96.94
AT1G25260.1	Thale cress	nucleus	88.21	85.96
VIT_12s0034g01000.t01	Wine grape	nucleus	78.6	78.6
KRH43991	Soybean	endoplasmic reticulum	76.42	76.42
KRH10455	Soybean	nucleus	75.98	75.98
Solyc01g104470.2.1	Tomato	nucleus	74.67	74.67
PGSC0003DMT400061021	Potato	nucleus	74.24	74.24
GSMUA_Achr10P...	Banana	nucleus	70.31	70.93
EES09085	Sorghum	mitochondrion	63.76	63.2
KXG22766	Sorghum	mitochondrion	63.32	62.77
TraesCS5A01G153300.1	Wheat	nucleus	62.88	61.54
TraesCS5D01G158600.1	Wheat	nucleus	62.45	61.11
TraesCS5B01G152500.1	Wheat	nucleus	62.45	61.11
Os11t0105400-01	Rice	nucleus	62.01	60.94
Zm00001d044615_P001	Maize	nucleus	63.76	58.63
HORVU5Hr1G047980.5	Barley	cytosol, nucleus	58.95	57.69
Os12t0105200-00	Rice	cytosol, nucleus	59.83	57.08
Zm00001d005089_P005	Maize	mitochondrion	58.08	55.88
GSMUA_Achr4P18800_001	Banana	mitochondrion	30.57	47.3
Zm00001d003202_P002	Maize	cytosol	37.99	43.07

Protein Annotations

MapMan:17.1.2.2.2.6	Gene3D:3.30.70.1730	Gene3D:3.90.105.20	EnsemblPlantsGene:Bra024770	EnsemblPlants:Bra024770.1	EnsemblPlants:Bra024770.1-P
GO:GO:0000027	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0042254	UniProt:M4E7L4
InterPro:Mrt4	PFAM:PF00466	PANTHER:PTHR21141	PANTHER:PTHR21141:SF37	InterPro:Ribosomal_L10P	SUPFAM:SSF160369
UniParc:UPI00025426B9	:	:	:	:	:

Description

AT1G25260 (E=3e-109) | acidic ribosomal protein P0-related

Coordinates

chrA09:-:22859918..22861356

Molecular Weight (calculated)

26200.5 Da

IEP (calculated)

9.094

GRAVY (calculated)

-0.500

Length

229 amino acids

Sequence
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKEIIVNGI REAVEKHTSV YVFSFENMRN IKFKEFRNQF RHNGRFFLGS NKVMQVALGR SASDEIRPGI FKVSKLLHGD
101: AGLLVTDMPK EEVESLFNAY EDSDFSRTGS TAVETVELKE GPLEQFTHEM EPFLRKQGMP VRLNKGTVEL LSDFVVCEEG KPLSPESSRI LRLLGIKLAT
201: FKLNLVCRWS PNDFELYREG LDLSDVETS

Best Arabidopsis Sequence Match ( AT1G25260.1 )
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS

Arabidopsis Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.