Factsheet for Zm00001d044615_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09085	Sorghum	mitochondrion	89.96	96.97
KXG22766	Sorghum	mitochondrion	89.56	96.54
TraesCS5D01G158600.1	Wheat	nucleus	83.53	88.89
TraesCS5B01G152500.1	Wheat	nucleus	83.53	88.89
Os11t0105400-01	Rice	nucleus	83.13	88.84
TraesCS5A01G153300.1	Wheat	nucleus	83.13	88.46
HORVU5Hr1G047980.5	Barley	cytosol, nucleus	79.52	84.62
Zm00001d005089_P005	Maize	mitochondrion	79.92	83.61
Os12t0105200-00	Rice	cytosol, nucleus	80.32	83.33
KRH10455	Soybean	nucleus	64.26	69.87
KRH43991	Soybean	endoplasmic reticulum	63.86	69.43
VIT_12s0034g01000.t01	Wine grape	nucleus	63.45	69.0
GSMUA_Achr10P...	Banana	nucleus	62.65	68.72
PGSC0003DMT400061021	Potato	nucleus	62.65	68.12
Solyc01g104470.2.1	Tomato	nucleus	62.65	68.12
CDY64691	Canola	nucleus	59.44	64.63
CDY36122	Canola	nucleus	59.44	64.63
Bra012490.1-P	Field mustard	nucleus	59.44	64.63
Bra010982.1-P	Field mustard	nucleus	59.44	64.63
Zm00001d003202_P002	Maize	cytosol	51.81	63.86
Bra024770.1-P	Field mustard	nucleus	58.63	63.76
AT1G25260.1	Thale cress	nucleus	57.03	60.43
GSMUA_Achr4P18800_001	Banana	mitochondrion	29.72	50.0
CDY51987	Canola	cytosol, nucleus, plastid	59.04	49.0
CDY18189	Canola	cytosol	22.09	41.35

Protein Annotations

EntrezGene:100194040	MapMan:17.1.2.2.2.6	Gene3D:3.30.70.1730	Gene3D:3.90.105.20	UniProt:A0A1D6NQ19	GO:GO:0000027
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0005840	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0042254	InterPro:Mrt4
ProteinID:ONM42050.1	PFAM:PF00466	PANTHER:PTHR21141	PANTHER:PTHR21141:SF37	InterPro:Ribosomal_L10P	SUPFAM:SSF160369
UniParc:UPI000843E421	EnsemblPlantsGene:Zm00001d044615	EnsemblPlants:Zm00001d044615_P001	EnsemblPlants:Zm00001d044615_T001	:	:

Description

ribosomal protein L10 homolog ribosomal protein L10 homolog

Coordinates

chr3:-:233458261..233460440

Molecular Weight (calculated)

28086.0 Da

IEP (calculated)

9.496

GRAVY (calculated)

-0.445

Length

249 amino acids

Sequence
(BLAST)

001: MPKSKRNRPV TLSKTKKKPG LERKGKVVAE IKDAVDKYSS AYVFTYDNMR NQKLKDLREQ LKSSSRIFLA GKKVMQIALG RSPADEAKTG LHKLSKFLQG
101: NSGLLFTNLP RDDVERMFRE FEEHDFARTG STAIDTALGV NVLPVYTDTI THTVVELKEG PLEQFTHEME PFLRKQGLPV RLNKGVVELV ADHVVCEEGK
201: PLSPEAAQTL RLLGIQMATF RLYLVCRWSG DDFEVYKEGL MHLGADESS

Best Arabidopsis Sequence Match ( AT1G25260.1 )
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS

Arabidopsis Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.