CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010982.1-P	Field mustard	nucleus	99.56	99.56
CDY64691	Canola	nucleus	97.38	97.38
AT1G25260.1	Thale cress	nucleus	89.96	87.66
VIT_12s0034g01000.t01	Wine grape	nucleus	78.17	78.17
KRH43991	Soybean	endoplasmic reticulum	76.86	76.86
KRH10455	Soybean	nucleus	76.42	76.42
CDY51987	Canola	cytosol, nucleus, plastid	99.13	75.67
Solyc01g104470.2.1	Tomato	nucleus	75.11	75.11
PGSC0003DMT400061021	Potato	nucleus	74.67	74.67
GSMUA_Achr10P...	Banana	nucleus	71.18	71.81
EES09085	Sorghum	mitochondrion	64.63	64.07
CDY18189	Canola	cytosol	37.12	63.91
KXG22766	Sorghum	mitochondrion	64.19	63.64
TraesCS5A01G153300.1	Wheat	nucleus	62.88	61.54
Os11t0105400-01	Rice	nucleus	62.45	61.37
TraesCS5B01G152500.1	Wheat	nucleus	62.45	61.11
TraesCS5D01G158600.1	Wheat	nucleus	62.45	61.11
Zm00001d044615_P001	Maize	nucleus	64.63	59.44
HORVU5Hr1G047980.5	Barley	cytosol, nucleus	58.95	57.69
Os12t0105200-00	Rice	cytosol, nucleus	60.26	57.5
Zm00001d005089_P005	Maize	mitochondrion	58.52	56.3
GSMUA_Achr4P18800_001	Banana	mitochondrion	30.57	47.3
Zm00001d003202_P002	Maize	cytosol	37.99	43.07

Protein Annotations

MapMan:17.1.2.2.2.6	Gene3D:3.30.70.1730	Gene3D:3.90.105.20	GO:A0A078HEA3	UniProt:A0A078HEA3	EnsemblPlants:CDY36122
ProteinID:CDY36122	ProteinID:CDY36122.1	GO:GO:0000027	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0042254	EnsemblPlantsGene:GSBRNA2T00059962001	InterPro:Mrt4	PFAM:PF00466	PANTHER:PTHR21141	PANTHER:PTHR21141:SF37
InterPro:Ribosomal_L10P	SUPFAM:SSF160369	UniParc:UPI0004EF03A1	:	:	:

Description

BnaA08g19260DRibosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:A0A078HEA3]

Coordinates

chrLK032367:+:222891..224629

Molecular Weight (calculated)

26242.6 Da

IEP (calculated)

9.378

GRAVY (calculated)

-0.528

Length

229 amino acids

Sequence
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKETIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGRFFLGS NKVMQVALGR SASDEMRPGI FKVSKMLRGD
101: AGLLVTDMPK EEVESLFNAY EDSDFSRTGS TAVETVELKE GPLEQFTHEM EPFLRKQGMP VRLNKGTVEL LSDFVVCEEG KPLSPESSRI LRLLGIKLAT
201: FKLNLVCRWS PSDFELYREG LDLSDVETS

Best Arabidopsis Sequence Match ( AT1G25260.1 )
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS

Arabidopsis Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.