CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36122	Canola	nucleus	75.67	99.13
Bra010982.1-P	Field mustard	nucleus	75.33	98.69
CDY64691	Canola	nucleus	74.0	96.94
AT1G25260.1	Thale cress	nucleus	68.0	86.81
VIT_12s0034g01000.t01	Wine grape	nucleus	59.33	77.73
KRH10455	Soybean	nucleus	58.0	75.98
KRH43991	Soybean	endoplasmic reticulum	58.0	75.98
Solyc01g104470.2.1	Tomato	nucleus	57.0	74.67
PGSC0003DMT400061021	Potato	nucleus	56.67	74.24
GSMUA_Achr10P...	Banana	nucleus	54.33	71.81
EES09085	Sorghum	mitochondrion	49.0	63.64
KXG22766	Sorghum	mitochondrion	48.67	63.2
CDY18189	Canola	cytosol	27.67	62.41
TraesCS5A01G153300.1	Wheat	nucleus	48.0	61.54
Os11t0105400-01	Rice	nucleus	47.67	61.37
TraesCS5B01G152500.1	Wheat	nucleus	47.67	61.11
TraesCS5D01G158600.1	Wheat	nucleus	47.67	61.11
Zm00001d044615_P001	Maize	nucleus	49.0	59.04
HORVU5Hr1G047980.5	Barley	cytosol, nucleus	45.0	57.69
Os12t0105200-00	Rice	cytosol, nucleus	46.0	57.5
Zm00001d005089_P005	Maize	mitochondrion	44.33	55.88
GSMUA_Achr4P18800_001	Banana	mitochondrion	23.33	47.3
Zm00001d003202_P002	Maize	cytosol	29.0	43.07

Protein Annotations

MapMan:17.1.2.2.2.6	Gene3D:3.30.70.1730	Gene3D:3.90.105.20	GO:A0A078IQ13	UniProt:A0A078IQ13	EnsemblPlants:CDY51987
ProteinID:CDY51987	ProteinID:CDY51987.1	GO:GO:0000027	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
GO:GO:0042254	EnsemblPlantsGene:GSBRNA2T00004669001	InterPro:Mrt4	PFAM:PF00466	PANTHER:PTHR21141	PANTHER:PTHR21141:SF37
InterPro:Ribosomal_L10P	SUPFAM:SSF160369	UniParc:UPI0004EDBA15	:	:	:

Description

BnaC03g75630DRibosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:A0A078IQ13]

Coordinates

chrLK033045:-:30698..32844

Molecular Weight (calculated)

34233.5 Da

IEP (calculated)

7.955

GRAVY (calculated)

-0.275

Length

300 amino acids

Sequence
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKETIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGRFFLGS NKVMQVALGR SASDEMHPGI FKVSKMLRGD
101: AGLLVTDMPK EEVESLFNAY EDSDFSRTGS TAVETVELKE GPLEQFTHEM EPFLRKQGMP VRLNKGTVEL LSDFVVCQEG KPLSPESSRI LRLLGIKLAT
201: FKLNLVCRWS PSDFELYREG LDLSDFLNIV LLLVLFGTVE VLSDFVVCEE GKPLSPESSR ILRLLGIKLA TFKLNLVCRW SPSDFELYRE GLDLSDVETS

Best Arabidopsis Sequence Match ( AT1G25260.1 )
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS

Arabidopsis Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.