Factsheet for GSMUA_Achr10P03110_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0034g01000.t01	Wine grape	nucleus	77.09	76.42
PGSC0003DMT400061021	Potato	nucleus	76.21	75.55
Solyc01g104470.2.1	Tomato	nucleus	75.77	75.11
KRH10455	Soybean	nucleus	73.57	72.93
KRH43991	Soybean	endoplasmic reticulum	73.13	72.49
Bra010982.1-P	Field mustard	nucleus	71.81	71.18
CDY36122	Canola	nucleus	71.81	71.18
CDY64691	Canola	nucleus	71.37	70.74
Bra012490.1-P	Field mustard	nucleus	71.37	70.74
Bra024770.1-P	Field mustard	nucleus	70.93	70.31
EES09085	Sorghum	mitochondrion	69.16	67.97
KXG22766	Sorghum	mitochondrion	69.16	67.97
Os11t0105400-01	Rice	nucleus	68.72	66.95
AT1G25260.1	Thale cress	nucleus	68.28	65.96
TraesCS5A01G153300.1	Wheat	nucleus	67.84	65.81
TraesCS5D01G158600.1	Wheat	nucleus	67.4	65.38
TraesCS5B01G152500.1	Wheat	nucleus	67.4	65.38
Os12t0105200-00	Rice	cytosol, nucleus	66.52	62.92
Zm00001d044615_P001	Maize	nucleus	68.72	62.65
HORVU5Hr1G047980.5	Barley	cytosol, nucleus	63.88	61.97
Zm00001d005089_P005	Maize	mitochondrion	59.47	56.72
CDY51987	Canola	cytosol, nucleus, plastid	71.81	54.33
GSMUA_Achr4P18800_001	Banana	mitochondrion	35.24	54.05
Zm00001d003202_P002	Maize	cytosol	40.09	45.05
CDY18189	Canola	cytosol	25.99	44.36

Protein Annotations

MapMan:17.1.2.2.2.6	Gene3D:3.30.70.1730	Gene3D:3.90.105.20	GO:GO:0000027	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0042254	EnsemblPlantsGene:GSMUA_Achr10G03110_001	EnsemblPlants:GSMUA_Achr10P03110_001	EnsemblPlants:GSMUA_Achr10T03110_001	UniProt:M0REY8
InterPro:Mrt4	PFAM:PF00466	PANTHER:PTHR21141	PANTHER:PTHR21141:SF37	InterPro:Ribosomal_L10P	SUPFAM:SSF160369
UniParc:UPI0002969203	SEG:seg	:	:	:	:

Description

Putative mRNA turnover protein 4 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr10G03110_001]

Coordinates

chr10:-:10560641..10563550

Molecular Weight (calculated)

26172.6 Da

IEP (calculated)

8.609

GRAVY (calculated)

-0.522

Length

227 amino acids

Sequence
(BLAST)

001: MPISKRNRTV TLSKTKKKGK EHKEAIVNAI KQALEDYASA YVFTFENMRN QRFKEFREQH KSTGRFFLGS NKVMQIALGR SVADEVKPGI HKLSKFLRGD
101: AGLLCTNLAK EEVQRRFQEY EEHDFARTGS IATEKVEIKE GPLDQFTHEM EPYLRKQGLP VRLNKGIVEL VSDFVVCEKG MPLSPESART LRLLGIKMAT
201: FRLHLVCCWT PEDFEIYNEE LDLSDIE

Best Arabidopsis Sequence Match ( AT1G25260.1 )
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS

Arabidopsis Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.