CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09085	Sorghum	mitochondrion	99.57	99.57
Os11t0105400-01	Rice	nucleus	90.48	89.7
Zm00001d044615_P001	Maize	nucleus	96.54	89.56
TraesCS5D01G158600.1	Wheat	nucleus	89.61	88.46
TraesCS5B01G152500.1	Wheat	nucleus	89.61	88.46
TraesCS5A01G153300.1	Wheat	nucleus	89.18	88.03
Os12t0105200-00	Rice	cytosol, nucleus	88.31	85.0
HORVU5Hr1G047980.5	Barley	cytosol, nucleus	85.28	84.19
Zm00001d005089_P005	Maize	mitochondrion	84.85	82.35
KRH10455	Soybean	nucleus	70.13	70.74
KRH43991	Soybean	endoplasmic reticulum	69.26	69.87
VIT_12s0034g01000.t01	Wine grape	nucleus	69.26	69.87
GSMUA_Achr10P...	Banana	nucleus	67.97	69.16
Solyc01g104470.2.1	Tomato	nucleus	68.4	69.0
PGSC0003DMT400061021	Potato	nucleus	67.97	68.56
CDY64691	Canola	nucleus	63.64	64.19
CDY36122	Canola	nucleus	63.64	64.19
Bra012490.1-P	Field mustard	nucleus	63.64	64.19
Bra010982.1-P	Field mustard	nucleus	63.64	64.19
Zm00001d003202_P002	Maize	cytosol	55.84	63.86
Bra024770.1-P	Field mustard	nucleus	62.77	63.32
AT1G25260.1	Thale cress	nucleus	61.04	60.0
GSMUA_Achr4P18800_001	Banana	mitochondrion	32.03	50.0
CDY51987	Canola	cytosol, nucleus, plastid	63.2	48.67
CDY18189	Canola	cytosol	24.24	42.11

Protein Annotations

MapMan:17.1.2.2.2.6	Gene3D:3.30.70.1730	Gene3D:3.90.105.20	UniProt:A0A1B6PAM3	GO:GO:0000027	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0042254	EnsemblPlants:KXG22766	ProteinID:KXG22766	ProteinID:KXG22766.1
InterPro:Mrt4	PFAM:PF00466	PANTHER:PTHR21141	PANTHER:PTHR21141:SF37	InterPro:Ribosomal_L10P	EnsemblPlantsGene:SORBI_3008G004000
SUPFAM:SSF160369	UniParc:UPI0002207192	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:375604..378292

Molecular Weight (calculated)

26217.6 Da

IEP (calculated)

9.344

GRAVY (calculated)

-0.529

Length

231 amino acids

Sequence
(BLAST)

001: MPKSKRNRAV TLSKTKKKPG LERKGKVVAE IKDAIDKYSS AYVFTYDNMR NQKLKDLREQ LKSSSRIFLA GKKVMQIALG RSPADEAKTG LHKLSKFLQG
101: DSGLFFTNLP RDDVERMFRE FEEHDFARTG STAAETVELK EGPLEQFTHE MEPFLRKQGL PVRLNKGVVE LVADHVVCEE GKPLSPEAAQ TLRLLGIQMA
201: TFRLYLVCRW SCDDFEVYKE GLMHLGADDS S

Best Arabidopsis Sequence Match ( AT1G25260.1 )
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS

Arabidopsis Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.