Factsheet for Zm00001d005089_P005

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

golgi 1
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	golgi, mitochondrion
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09085	Sorghum	mitochondrion	82.77	85.28
KXG22766	Sorghum	mitochondrion	82.35	84.85
Zm00001d044615_P001	Maize	nucleus	83.61	79.92
Os11t0105400-01	Rice	nucleus	76.05	77.68
TraesCS5D01G158600.1	Wheat	nucleus	75.21	76.5
TraesCS5B01G152500.1	Wheat	nucleus	75.21	76.5
TraesCS5A01G153300.1	Wheat	nucleus	74.79	76.07
HORVU5Hr1G047980.5	Barley	cytosol, nucleus	71.01	72.22
Os12t0105200-00	Rice	cytosol, nucleus	72.69	72.08
KRH10455	Soybean	nucleus	61.34	63.76
VIT_12s0034g01000.t01	Wine grape	nucleus	61.34	63.76
KRH43991	Soybean	endoplasmic reticulum	60.92	63.32
PGSC0003DMT400061021	Potato	nucleus	59.66	62.01
Solyc01g104470.2.1	Tomato	nucleus	59.66	62.01
GSMUA_Achr10P...	Banana	nucleus	56.72	59.47
CDY64691	Canola	nucleus	56.72	58.95
Bra012490.1-P	Field mustard	nucleus	56.72	58.95
CDY36122	Canola	nucleus	56.3	58.52
Bra010982.1-P	Field mustard	nucleus	56.3	58.52
Bra024770.1-P	Field mustard	nucleus	55.88	58.08
Zm00001d003202_P002	Maize	cytosol	48.32	56.93
AT1G25260.1	Thale cress	nucleus	53.78	54.47
GSMUA_Achr4P18800_001	Banana	mitochondrion	30.25	48.65
CDY51987	Canola	cytosol, nucleus, plastid	55.88	44.33
CDY18189	Canola	cytosol	21.85	39.1

Protein Annotations

MapMan:17.1.2.2.2.6	Gene3D:3.30.70.1730	Gene3D:3.90.105.20	UniProt:A0A1D6EJ69	GO:GO:0000027	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	GO:GO:0042254	InterPro:Mrt4	ProteinID:ONM20134.1	PFAM:PF00466
PANTHER:PTHR21141	PANTHER:PTHR21141:SF37	InterPro:Ribosomal_L10P	SUPFAM:SSF160369	UniParc:UPI000843D718	EnsemblPlantsGene:Zm00001d005089
EnsemblPlants:Zm00001d005089_P005	EnsemblPlants:Zm00001d005089_T005	:	:	:	:

Description

mRNA turnover protein 4

Coordinates

chr2:+:157768479..157770347

Molecular Weight (calculated)

26952.7 Da

IEP (calculated)

9.388

GRAVY (calculated)

-0.358

Length

238 amino acids

Sequence
(BLAST)

001: MPKSKRNRPV TLSKTKKKPG LERKGKVVAE IKDAVDKYSS AYVFTYDNMR NQKLKDLREQ LKSSSRHGAH IACLLIPSSA LVKSILPFQA IFFCSRIFLA
101: GKKFLQGNSG LLFTNLPRDD VERMFREFEE HDFARTGSTA ADTVELKEGP LEQFTHEMEP FLRKQGLPVR LNKGVVELVA DHVVCEEGKP LSPEAAQILR
201: LLGIQMATFR LYLVCRWSSD EFEAYKEGLM HLGADDSS

Best Arabidopsis Sequence Match ( AT1G25260.1 )
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS

Arabidopsis Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.