Factsheet for HORVU5Hr1G047980.5

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G158600.1	Wheat	nucleus	94.87	94.87
TraesCS5B01G152500.1	Wheat	nucleus	94.44	94.44
TraesCS5A01G153300.1	Wheat	nucleus	94.02	94.02
EES09085	Sorghum	mitochondrion	84.19	85.28
KXG22766	Sorghum	mitochondrion	84.19	85.28
Os11t0105400-01	Rice	nucleus	82.48	82.83
Os12t0105200-00	Rice	cytosol, nucleus	82.48	80.42
Zm00001d044615_P001	Maize	nucleus	84.62	79.52
Zm00001d005089_P005	Maize	mitochondrion	72.22	71.01
KRH43991	Soybean	endoplasmic reticulum	63.68	65.07
KRH10455	Soybean	nucleus	63.68	65.07
GSMUA_Achr10P...	Banana	nucleus	61.97	63.88
PGSC0003DMT400061021	Potato	nucleus	61.97	63.32
Solyc01g104470.2.1	Tomato	nucleus	61.97	63.32
VIT_12s0034g01000.t01	Wine grape	nucleus	61.54	62.88
CDY64691	Canola	nucleus	57.69	58.95
CDY36122	Canola	nucleus	57.69	58.95
Bra024770.1-P	Field mustard	nucleus	57.69	58.95
Bra012490.1-P	Field mustard	nucleus	57.69	58.95
Bra010982.1-P	Field mustard	nucleus	57.69	58.95
Zm00001d003202_P002	Maize	cytosol	50.0	57.92
AT1G25260.1	Thale cress	nucleus	57.27	57.02
GSMUA_Achr4P18800_001	Banana	mitochondrion	29.91	47.3
CDY51987	Canola	cytosol, nucleus, plastid	57.69	45.0
CDY18189	Canola	cytosol	23.08	40.6

Protein Annotations

MapMan:17.1.2.2.2.6	Gene3D:3.30.70.1730	Gene3D:3.90.105.20	UniProt:A0A287R3K0	GO:GO:0000027	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0022626	GO:GO:0042254	EnsemblPlantsGene:HORVU5Hr1G047980	EnsemblPlants:HORVU5Hr1G047980.5	InterPro:Mrt4
PFAM:PF00466	PANTHER:PTHR21141	PANTHER:PTHR21141:SF37	InterPro:Ribosomal_L10P	SUPFAM:SSF160369	UniParc:UPI000B4795B1

Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:A0A287R3K0]

Coordinates

chrchr5H:-:372318670..372321306

Molecular Weight (calculated)

26291.7 Da

IEP (calculated)

9.768

GRAVY (calculated)

-0.438

Length

234 amino acids

Sequence
(BLAST)

001: LASLIRPNLF TLSKTKKKPG LERKGKVVTE IKDAIERHSS AYVFTYNNMR NQKLKALRDQ LKSSSRIFLA GKKVMQIALG RSPADEAKTG LHKLSKFLQG
101: ASGLLFTNLP RDDVERLFRE FEANDFARTG SIATQTVELK EGPLEKFSHE MEPFLRKQGL PVRLNKGVVE LVADHVVCEE GKPLSPEAAH TLRVLGTKMA
201: TFRLYLVCRW SSDDFEVYKE GLAHLGGEED DESS

Best Arabidopsis Sequence Match ( AT1G25260.1 )
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS

Arabidopsis Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.