Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
21132161
endoplasmic reticulum: 23041469 endoplasmic reticulum: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
23041469
doi
National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH10455 | Soybean | nucleus | 96.07 | 96.07 |
| Solyc01g104470.2.1 | Tomato | nucleus | 83.41 | 83.41 |
| PGSC0003DMT400061021 | Potato | nucleus | 83.41 | 83.41 |
| VIT_12s0034g01000.t01 | Wine grape | nucleus | 79.91 | 79.91 |
| CDY36122 | Canola | nucleus | 76.86 | 76.86 |
| Bra010982.1-P | Field mustard | nucleus | 76.42 | 76.42 |
| Bra024770.1-P | Field mustard | nucleus | 76.42 | 76.42 |
| CDY64691 | Canola | nucleus | 75.98 | 75.98 |
| Bra012490.1-P | Field mustard | nucleus | 75.98 | 75.98 |
| GSMUA_Achr10P... | Banana | nucleus | 72.49 | 73.13 |
| AT1G25260.1 | Thale cress | nucleus | 71.62 | 69.79 |
| EES09085 | Sorghum | mitochondrion | 69.87 | 69.26 |
| KXG22766 | Sorghum | mitochondrion | 69.87 | 69.26 |
| TraesCS5A01G153300.1 | Wheat | nucleus | 69.43 | 67.95 |
| TraesCS5D01G158600.1 | Wheat | nucleus | 69.0 | 67.52 |
| TraesCS5B01G152500.1 | Wheat | nucleus | 69.0 | 67.52 |
| Os11t0105400-01 | Rice | nucleus | 68.12 | 66.95 |
| Zm00001d044615_P001 | Maize | nucleus | 69.43 | 63.86 |
| HORVU5Hr1G047980.5 | Barley | cytosol, nucleus | 65.07 | 63.68 |
| Os12t0105200-00 | Rice | cytosol, nucleus | 65.94 | 62.92 |
| Zm00001d005089_P005 | Maize | mitochondrion | 63.32 | 60.92 |
| CDY51987 | Canola | cytosol, nucleus, plastid | 75.98 | 58.0 |
| GSMUA_Achr4P18800_001 | Banana | mitochondrion | 33.62 | 52.03 |
| CDY18189 | Canola | cytosol | 29.26 | 50.38 |
| Zm00001d003202_P002 | Maize | cytosol | 41.05 | 46.53 |
Protein Annotations
| EntrezGene:100305462 | MapMan:17.1.2.2.2.6 | Gene3D:3.30.70.1730 | Gene3D:3.90.105.20 | EMBL:ACUP02004906 | EnsemblPlantsGene:GLYMA_08G184300 |
| GO:GO:0000027 | GO:GO:0000956 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0042254 | UniProt:I1KUJ6 | EnsemblPlants:KRH43991 |
| ProteinID:KRH43991 | ProteinID:KRH43991.1 | InterPro:Mrt4 | PFAM:PF00466 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF37 |
| InterPro:Ribosomal_L10P | SUPFAM:SSF160369 | UniParc:UPI0000E6341A | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr8:+:14783427..14786035
Molecular Weight (calculated)
26341.7 Da
IEP (calculated)
9.110
GRAVY (calculated)
-0.628
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKSKRNRQV TLSKTKKKGR DHKETIVNGI KDAAEKYGHV YVFSFENMRN QKFKEFRDQL KSSSRFFLGS NKVMQVALGR SASDEIRPGL HKVSKLLRGD
101: SGMVFTNLSK EEVERLFKEF EEYDFARTGS NATEKVDLKE GPLEQFTHEM EPFLRKQGMP VRLNKGVVEL VSDFVVCEEG KPLSPEASRI LRLMGIKMAT
201: FRLSLICRWS PDEFELYIDG PDESDIECS
101: SGMVFTNLSK EEVERLFKEF EEYDFARTGS NATEKVDLKE GPLEQFTHEM EPFLRKQGMP VRLNKGVVEL VSDFVVCEEG KPLSPEASRI LRLMGIKMAT
201: FRLSLICRWS PDEFELYIDG PDESDIECS
001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS
Arabidopsis Description
Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.