Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY64691 | Canola | nucleus | 66.17 | 38.43 |
| CDY36122 | Canola | nucleus | 63.91 | 37.12 |
| AT1G25260.1 | Thale cress | nucleus | 56.39 | 31.91 |
| VIT_12s0034g01000.t01 | Wine grape | nucleus | 52.63 | 30.57 |
| KRH43991 | Soybean | endoplasmic reticulum | 50.38 | 29.26 |
| KRH10455 | Soybean | nucleus | 48.87 | 28.38 |
| CDY51987 | Canola | cytosol, nucleus, plastid | 62.41 | 27.67 |
| PGSC0003DMT400061021 | Potato | nucleus | 47.37 | 27.51 |
| Solyc01g104470.2.1 | Tomato | nucleus | 47.37 | 27.51 |
| GSMUA_Achr10P... | Banana | nucleus | 44.36 | 25.99 |
| EES09085 | Sorghum | mitochondrion | 42.11 | 24.24 |
| KXG22766 | Sorghum | mitochondrion | 42.11 | 24.24 |
| TraesCS5D01G158600.1 | Wheat | nucleus | 41.35 | 23.5 |
| TraesCS5A01G153300.1 | Wheat | nucleus | 41.35 | 23.5 |
| TraesCS5B01G152500.1 | Wheat | nucleus | 41.35 | 23.5 |
| HORVU5Hr1G047980.5 | Barley | cytosol, nucleus | 40.6 | 23.08 |
| Os11t0105400-01 | Rice | nucleus | 39.1 | 22.32 |
| Zm00001d044615_P001 | Maize | nucleus | 41.35 | 22.09 |
| Zm00001d005089_P005 | Maize | mitochondrion | 39.1 | 21.85 |
| Os12t0105200-00 | Rice | cytosol, nucleus | 39.1 | 21.67 |
| Zm00001d003202_P002 | Maize | cytosol | 30.83 | 20.3 |
| GSMUA_Achr4P18800_001 | Banana | mitochondrion | 20.3 | 18.24 |
Protein Annotations
| EnsemblPlants:CDY18189 | EnsemblPlantsGene:GSBRNA2T00002717001 | Gene3D:3.30.70.1730 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF37 | ProteinID:CDY18189 |
| ProteinID:CDY18189.1 | UniParc:UPI0004EE9439 | UniProt:A0A078FYG5 | MapMan:35.2 | : | : |
Description
BnaC05g02120DBnaC05g02120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FYG5]
Coordinates
chrLK032083:-:223539..224862
Molecular Weight (calculated)
14780.8 Da
IEP (calculated)
5.908
GRAVY (calculated)
-0.011
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MQVALGRSAS DEIRPCIFKA FKLLHGVAGL LITNMPKEEV ESLFNAYENS DFSRTRSTAV ETVCTVEVLS DFVVCEEGKP LSQKSSRILC PLGIKLAISN
101: STWSADGALM TLSLTEKAWI SRMLKQNFDD QRF
101: STWSADGALM TLSLTEKAWI SRMLKQNFDD QRF
001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS
Arabidopsis Description
Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.