Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY36122 | Canola | nucleus | 87.66 | 89.96 |
| Bra010982.1-P | Field mustard | nucleus | 87.66 | 89.96 |
| Bra012490.1-P | Field mustard | nucleus | 87.23 | 89.52 |
| CDY64691 | Canola | nucleus | 87.23 | 89.52 |
| Bra024770.1-P | Field mustard | nucleus | 85.96 | 88.21 |
| VIT_12s0034g01000.t01 | Wine grape | nucleus | 72.34 | 74.24 |
| KRH10455 | Soybean | nucleus | 70.64 | 72.49 |
| KRH43991 | Soybean | endoplasmic reticulum | 69.79 | 71.62 |
| Solyc01g104470.2.1 | Tomato | nucleus | 69.36 | 71.18 |
| PGSC0003DMT400061021 | Potato | nucleus | 68.94 | 70.74 |
| GSMUA_Achr10P... | Banana | nucleus | 65.96 | 68.28 |
| CDY51987 | Canola | cytosol, nucleus, plastid | 86.81 | 68.0 |
| EES09085 | Sorghum | mitochondrion | 60.43 | 61.47 |
| TraesCS5A01G153300.1 | Wheat | nucleus | 60.85 | 61.11 |
| KXG22766 | Sorghum | mitochondrion | 60.0 | 61.04 |
| Os11t0105400-01 | Rice | nucleus | 60.43 | 60.94 |
| TraesCS5B01G152500.1 | Wheat | nucleus | 60.43 | 60.68 |
| TraesCS5D01G158600.1 | Wheat | nucleus | 60.43 | 60.68 |
| HORVU5Hr1G047980.5 | Barley | cytosol, nucleus | 57.02 | 57.27 |
| Os12t0105200-00 | Rice | cytosol, nucleus | 58.3 | 57.08 |
| Zm00001d044615_P001 | Maize | nucleus | 60.43 | 57.03 |
| CDY18189 | Canola | cytosol | 31.91 | 56.39 |
| Zm00001d005089_P005 | Maize | mitochondrion | 54.47 | 53.78 |
| GSMUA_Achr4P18800_001 | Banana | mitochondrion | 27.23 | 43.24 |
| Zm00001d003202_P002 | Maize | cytosol | 35.32 | 41.09 |
Protein Annotations
| MapMan:17.1.2.2.2.6 | Gene3D:3.30.70.1730 | Gene3D:3.90.105.20 | EntrezGene:839109 | UniProt:A0A178WMT0 | ProteinID:AEE30594.1 |
| ArrayExpress:AT1G25260 | EnsemblPlantsGene:AT1G25260 | RefSeq:AT1G25260 | TAIR:AT1G25260 | RefSeq:AT1G25260-TAIR-G | EnsemblPlants:AT1G25260.1 |
| TAIR:AT1G25260.1 | EMBL:AY045969 | EMBL:AY079322 | EMBL:AY088374 | GO:GO:0000027 | GO:GO:0000956 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006139 |
| GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0022626 | GO:GO:0042254 | InterPro:Mrt4 | RefSeq:NP_564226.1 | ProteinID:OAP19504.1 | PFAM:PF00466 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF37 | UniProt:Q94AK8 | InterPro:Ribosomal_L10P | SUPFAM:SSF160369 |
| UniParc:UPI00000A4E93 | : | : | : | : | : |
Description
Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
Coordinates
chr1:-:8853534..8855874
Molecular Weight (calculated)
27243.9 Da
IEP (calculated)
8.445
GRAVY (calculated)
-0.548
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.