Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES09085 | Sorghum | mitochondrion | 63.86 | 55.84 |
| KXG22766 | Sorghum | mitochondrion | 63.86 | 55.84 |
| Os11t0105400-01 | Rice | nucleus | 59.9 | 51.93 |
| Zm00001d044615_P001 | Maize | nucleus | 63.86 | 51.81 |
| TraesCS5D01G158600.1 | Wheat | nucleus | 58.91 | 50.85 |
| TraesCS5B01G152500.1 | Wheat | nucleus | 58.91 | 50.85 |
| TraesCS5A01G153300.1 | Wheat | nucleus | 58.91 | 50.85 |
| Os12t0105200-00 | Rice | cytosol, nucleus | 60.4 | 50.83 |
| HORVU5Hr1G047980.5 | Barley | cytosol, nucleus | 57.92 | 50.0 |
| Zm00001d005089_P005 | Maize | mitochondrion | 56.93 | 48.32 |
| VIT_12s0034g01000.t01 | Wine grape | nucleus | 49.01 | 43.23 |
| KRH10455 | Soybean | nucleus | 47.03 | 41.48 |
| KRH43991 | Soybean | endoplasmic reticulum | 46.53 | 41.05 |
| PGSC0003DMT400061021 | Potato | nucleus | 45.54 | 40.17 |
| Solyc01g104470.2.1 | Tomato | nucleus | 45.54 | 40.17 |
| GSMUA_Achr10P... | Banana | nucleus | 45.05 | 40.09 |
| CDY64691 | Canola | nucleus | 43.07 | 37.99 |
| CDY36122 | Canola | nucleus | 43.07 | 37.99 |
| Bra024770.1-P | Field mustard | nucleus | 43.07 | 37.99 |
| Bra012490.1-P | Field mustard | nucleus | 43.07 | 37.99 |
| Bra010982.1-P | Field mustard | nucleus | 43.07 | 37.99 |
| AT1G25260.1 | Thale cress | nucleus | 41.09 | 35.32 |
| GSMUA_Achr4P18800_001 | Banana | mitochondrion | 23.76 | 32.43 |
| CDY18189 | Canola | cytosol | 20.3 | 30.83 |
| CDY51987 | Canola | cytosol, nucleus, plastid | 43.07 | 29.0 |
Protein Annotations
| EnsemblPlants:Zm00001d003202_P002 | EnsemblPlants:Zm00001d003202_T002 | EnsemblPlantsGene:Zm00001d003202 | Gene3D:3.30.70.1730 | Gene3D:3.90.105.20 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | PANTHER:PTHR21141 | PANTHER:PTHR21141:SF37 |
| ProteinID:ONM16373.1 | UniParc:UPI0008443084 | UniProt:A0A1D6E7G9 | MapMan:35.2 | : | : |
Description
Ribosomal protein L10 family protein
Coordinates
chr2:-:35512929..35515267
Molecular Weight (calculated)
23055.0 Da
IEP (calculated)
6.775
GRAVY (calculated)
-0.044
Length
202 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIALGRPPA DEAETGLHKL SKARAFLQGN SGLFFTNLPR DDVERMFREF EEHDFARTGC TAADTVFWFC FFIYIPGLVS SNRLTRKLTM KLICGSSLVP
101: FLVSCIMCFA KFTEPFKKTF TIPQVELKEG PLEQFTHEME PFLRKQGLPV RLNKGVVELV ADHRLLGIQM ATFHLYLVCR WSSDEFEAYK EGLMHLGADD
201: SS
101: FLVSCIMCFA KFTEPFKKTF TIPQVELKEG PLEQFTHEME PFLRKQGLPV RLNKGVVELV ADHRLLGIQM ATFHLYLVCR WSSDEFEAYK EGLMHLGADD
201: SS
001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS
Arabidopsis Description
Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.