Factsheet for Os12t0105200-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 1
plastid 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 23777608

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0105400-01	Rice	nucleus	92.08	94.85
KXG22766	Sorghum	mitochondrion	85.0	88.31
EES09085	Sorghum	mitochondrion	84.58	87.88
TraesCS5D01G158600.1	Wheat	nucleus	82.08	84.19
TraesCS5B01G152500.1	Wheat	nucleus	82.08	84.19
TraesCS5A01G153300.1	Wheat	nucleus	81.67	83.76
HORVU5Hr1G047980.5	Barley	cytosol, nucleus	80.42	82.48
Zm00001d044615_P001	Maize	nucleus	83.33	80.32
Zm00001d005089_P005	Maize	mitochondrion	72.08	72.69
KRH10455	Soybean	nucleus	64.17	67.25
GSMUA_Achr10P...	Banana	nucleus	62.92	66.52
VIT_12s0034g01000.t01	Wine grape	nucleus	63.33	66.38
KRH43991	Soybean	endoplasmic reticulum	62.92	65.94
Solyc01g104470.2.1	Tomato	nucleus	61.25	64.19
PGSC0003DMT400061021	Potato	nucleus	60.83	63.76
Zm00001d003202_P002	Maize	cytosol	50.83	60.4
CDY64691	Canola	nucleus	57.5	60.26
CDY36122	Canola	nucleus	57.5	60.26
Bra012490.1-P	Field mustard	nucleus	57.5	60.26
Bra010982.1-P	Field mustard	nucleus	57.5	60.26
Bra024770.1-P	Field mustard	nucleus	57.08	59.83
AT1G25260.1	Thale cress	nucleus	57.08	58.3
GSMUA_Achr4P18800_001	Banana	mitochondrion	30.0	48.65
CDY51987	Canola	cytosol, nucleus, plastid	57.5	46.0
CDY18189	Canola	cytosol	21.67	39.1

Protein Annotations

MapMan:17.1.2.2.2.6	Gene3D:3.30.70.1730	Gene3D:3.90.105.20	UniProt:A0A0P0Y5W0	ProteinID:BAT15487.1	GO:GO:0000027
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0005840	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0042254	InterPro:Mrt4
EnsemblPlantsGene:Os12g0105200	EnsemblPlants:Os12t0105200-00	PFAM:PF00466	PANTHER:PTHR21141	PANTHER:PTHR21141:SF37	InterPro:Ribosomal_L10P
SUPFAM:SSF160369	UniParc:UPI0003939489	:	:	:	:

Description

Similar to mRNA turnover protein 4. (Os12t0105200-00)

Coordinates

chr12:-:267897..269698

Molecular Weight (calculated)

27029.5 Da

IEP (calculated)

7.555

GRAVY (calculated)

-0.415

Length

240 amino acids

Sequence
(BLAST)

001: LVISTKALIC APDSSAVTLS KTKKKPGLER KGKVVTDIKD AVEHYANAYV FTYDNMRNQK LKDLREQLKS SSRIFLAGKK VMQIALGRSP ADEAKTGLHK
101: LSKFLQGDTG LFFTNLPRDD VERLFREFEE HDFARTGSIA TETVELKEGP LEQFTHEMEP FLRKQGMPVR LNKGAVELVA DHIVCEEGKP ISPEAAQTLR
201: LLGMQMATFR LYLVCRWSSD DFEVYKEGLA QLRAEADDSS

Best Arabidopsis Sequence Match ( AT1G25260.1 )
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS

Arabidopsis Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.