CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43991	Soybean	endoplasmic reticulum	96.07	96.07
Solyc01g104470.2.1	Tomato	nucleus	82.53	82.53
PGSC0003DMT400061021	Potato	nucleus	82.1	82.1
VIT_12s0034g01000.t01	Wine grape	nucleus	80.35	80.35
CDY36122	Canola	nucleus	76.42	76.42
Bra010982.1-P	Field mustard	nucleus	75.98	75.98
Bra024770.1-P	Field mustard	nucleus	75.98	75.98
CDY64691	Canola	nucleus	75.55	75.55
Bra012490.1-P	Field mustard	nucleus	75.55	75.55
GSMUA_Achr10P...	Banana	nucleus	72.93	73.57
AT1G25260.1	Thale cress	nucleus	72.49	70.64
EES09085	Sorghum	mitochondrion	70.74	70.13
KXG22766	Sorghum	mitochondrion	70.74	70.13
Os11t0105400-01	Rice	nucleus	69.43	68.24
TraesCS5A01G153300.1	Wheat	nucleus	69.43	67.95
TraesCS5D01G158600.1	Wheat	nucleus	69.0	67.52
TraesCS5B01G152500.1	Wheat	nucleus	69.0	67.52
Zm00001d044615_P001	Maize	nucleus	69.87	64.26
Os12t0105200-00	Rice	cytosol, nucleus	67.25	64.17
HORVU5Hr1G047980.5	Barley	cytosol, nucleus	65.07	63.68
Zm00001d005089_P005	Maize	mitochondrion	63.76	61.34
CDY51987	Canola	cytosol, nucleus, plastid	75.98	58.0
GSMUA_Achr4P18800_001	Banana	mitochondrion	34.5	53.38
CDY18189	Canola	cytosol	28.38	48.87
Zm00001d003202_P002	Maize	cytosol	41.48	47.03

Protein Annotations

EntrezGene:100500064	MapMan:17.1.2.2.2.6	Gene3D:3.30.70.1730	Gene3D:3.90.105.20	EMBL:ACUP02009142	EnsemblPlantsGene:GLYMA_15G048200
GO:GO:0000027	GO:GO:0000956	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0042254	UniProt:I1MDQ9	EnsemblPlants:KRH10455
ProteinID:KRH10455	ProteinID:KRH10455.1	InterPro:Mrt4	PFAM:PF00466	PANTHER:PTHR21141	PANTHER:PTHR21141:SF37
InterPro:Ribosomal_L10P	SUPFAM:SSF160369	UniParc:UPI00023D3049	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr15:+:3812816..3815263

Molecular Weight (calculated)

26358.8 Da

IEP (calculated)

8.888

GRAVY (calculated)

-0.582

Length

229 amino acids

Sequence
(BLAST)

001: MPKSKRNRQV TLSKTKKKGR DHKETIVNGI KDAAEKYGCV YVFSFENMRN QKLKEFREQL KSNSRFFLGS NKVMQVALGR SASDEIRPGL HKVSKLLRGD
101: SGMFFTNLSK EEVERLFKEF EEYDFARTGS IATEKVDLKE GPLEQFTHEM EPFLRKQGMP VRLNKGVVEL VSDFVVCDEG KPLSPEAARI LRLMGIKMAT
201: FRLNLICRWS PDEFELYIDG PDESDIECS

Best Arabidopsis Sequence Match ( AT1G25260.1 )
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS

Arabidopsis Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.