CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22766	Sorghum	mitochondrion	99.57	99.57
Os11t0105400-01	Rice	nucleus	90.91	90.13
Zm00001d044615_P001	Maize	nucleus	96.97	89.96
TraesCS5D01G158600.1	Wheat	nucleus	89.61	88.46
TraesCS5B01G152500.1	Wheat	nucleus	89.61	88.46
TraesCS5A01G153300.1	Wheat	nucleus	89.18	88.03
Os12t0105200-00	Rice	cytosol, nucleus	87.88	84.58
HORVU5Hr1G047980.5	Barley	cytosol, nucleus	85.28	84.19
Zm00001d005089_P005	Maize	mitochondrion	85.28	82.77
KRH10455	Soybean	nucleus	70.13	70.74
VIT_12s0034g01000.t01	Wine grape	nucleus	69.7	70.31
KRH43991	Soybean	endoplasmic reticulum	69.26	69.87
GSMUA_Achr10P...	Banana	nucleus	67.97	69.16
PGSC0003DMT400061021	Potato	nucleus	67.97	68.56
Solyc01g104470.2.1	Tomato	nucleus	67.97	68.56
CDY64691	Canola	nucleus	64.07	64.63
CDY36122	Canola	nucleus	64.07	64.63
Bra012490.1-P	Field mustard	nucleus	64.07	64.63
Bra010982.1-P	Field mustard	nucleus	64.07	64.63
Zm00001d003202_P002	Maize	cytosol	55.84	63.86
Bra024770.1-P	Field mustard	nucleus	63.2	63.76
AT1G25260.1	Thale cress	nucleus	61.47	60.43
GSMUA_Achr4P18800_001	Banana	mitochondrion	32.03	50.0
CDY51987	Canola	cytosol, nucleus, plastid	63.64	49.0
CDY18189	Canola	cytosol	24.24	42.11

Protein Annotations

MapMan:17.1.2.2.2.6	Gene3D:3.30.70.1730	Gene3D:3.90.105.20	EntrezGene:8079964	UniProt:C5Y2Z2	EnsemblPlants:EES09085
ProteinID:EES09085	ProteinID:EES09085.1	GO:GO:0000027	GO:GO:0000956	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0042254
InterPro:Mrt4	PFAM:PF00466	PANTHER:PTHR21141	PANTHER:PTHR21141:SF37	InterPro:Ribosomal_L10P	EnsemblPlantsGene:SORBI_3005G003800
SUPFAM:SSF160369	unigene:Sbi.15754	UniParc:UPI0001A868D7	RefSeq:XP_002450097.1	:	:

Description

hypothetical protein

Coordinates

chr5:-:311494..314786

Molecular Weight (calculated)

26243.7 Da

IEP (calculated)

9.344

GRAVY (calculated)

-0.544

Length

231 amino acids

Sequence
(BLAST)

001: MPKSKRNRPV TLSKTKKKPG LERKGKVVAE IKDAIDKYSS AYVFTYDNMR NQKLKDLREQ LKSSSRIFLA GKKVMQIALG RSPADEAKTG LHKLSKFLQG
101: DSGLFFTNLP RDDVERMFRE FEEHDFARTG STAAETVELK EGPLEQFTHE MEPFLRKQGL PVRLNKGVVE LVADHVVCEE GKPLSPEAAQ TLRLLGIQMA
201: TFRLYLVCRW SCDDFEVYKE GLMHLGADDS S

Best Arabidopsis Sequence Match ( AT1G25260.1 )
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS

Arabidopsis Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.