Factsheet for TraesCS5B01G152500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G158600.1	Wheat	nucleus	99.57	99.57
TraesCS5A01G153300.1	Wheat	nucleus	98.72	98.72
HORVU5Hr1G047980.5	Barley	cytosol, nucleus	94.44	94.44
KXG22766	Sorghum	mitochondrion	88.46	89.61
EES09085	Sorghum	mitochondrion	88.46	89.61
Os11t0105400-01	Rice	nucleus	87.18	87.55
Zm00001d044615_P001	Maize	nucleus	88.89	83.53
Os12t0105200-00	Rice	cytosol, nucleus	84.19	82.08
Zm00001d005089_P005	Maize	mitochondrion	76.5	75.21
KRH10455	Soybean	nucleus	67.52	69.0
KRH43991	Soybean	endoplasmic reticulum	67.52	69.0
GSMUA_Achr10P...	Banana	nucleus	65.38	67.4
PGSC0003DMT400061021	Potato	nucleus	65.81	67.25
Solyc01g104470.2.1	Tomato	nucleus	65.81	67.25
VIT_12s0034g01000.t01	Wine grape	nucleus	64.96	66.38
CDY64691	Canola	nucleus	61.11	62.45
CDY36122	Canola	nucleus	61.11	62.45
Bra024770.1-P	Field mustard	nucleus	61.11	62.45
Bra012490.1-P	Field mustard	nucleus	61.11	62.45
Bra010982.1-P	Field mustard	nucleus	61.11	62.45
AT1G25260.1	Thale cress	nucleus	60.68	60.43
Zm00001d003202_P002	Maize	cytosol	50.85	58.91
GSMUA_Achr4P18800_001	Banana	mitochondrion	30.77	48.65
CDY51987	Canola	cytosol, nucleus, plastid	61.11	47.67
CDY18189	Canola	cytosol	23.5	41.35

Protein Annotations

MapMan:17.1.2.2.2.6	Gene3D:3.30.70.1730	Gene3D:3.90.105.20	GO:GO:0000027	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0022626	GO:GO:0042254
InterPro:Mrt4	PFAM:PF00466	PANTHER:PTHR21141	PANTHER:PTHR21141:SF37	InterPro:Ribosomal_L10P	SUPFAM:SSF160369
EnsemblPlantsGene:TraesCS5B01G152500	EnsemblPlants:TraesCS5B01G152500.1	TIGR:cd05796	:	:	:

Description

No Description!

Coordinates

chr5B:-:281675804..281678331

Molecular Weight (calculated)

26378.8 Da

IEP (calculated)

10.015

GRAVY (calculated)

-0.544

Length

234 amino acids

Sequence
(BLAST)

001: MPKSKRNRSV TLSKTKKKPG LERKGKVVTE IKDAIERHSS AYVFTYNNMR NQKLKDLRDQ LKSSSRIFLA GKKVMQIALG RSPADEAKTG LHKLSKFLQG
101: ASGLLFTNLP RDDVERLFRE FEVNDFARTG SIATQTVELK EGPLEQFSHE MEPFLRKQGL PVRLNKGVVE LVADHVVCEE GKPLSPEAAH TLRVLGTKMA
201: TFRLYLVCRW SSDDFEVYKE GLAHLGGEEA DESS

Best Arabidopsis Sequence Match ( AT1G25260.1 )
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS

Arabidopsis Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.