Factsheet for Os11t0105400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
nucleus: 23777608
nucleus: 26035336

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0105200-00	Rice	cytosol, nucleus	94.85	92.08
EES09085	Sorghum	mitochondrion	90.13	90.91
KXG22766	Sorghum	mitochondrion	89.7	90.48
TraesCS5D01G158600.1	Wheat	nucleus	87.55	87.18
TraesCS5B01G152500.1	Wheat	nucleus	87.55	87.18
TraesCS5A01G153300.1	Wheat	nucleus	87.12	86.75
Zm00001d044615_P001	Maize	nucleus	88.84	83.13
HORVU5Hr1G047980.5	Barley	cytosol, nucleus	82.83	82.48
Zm00001d005089_P005	Maize	mitochondrion	77.68	76.05
KRH10455	Soybean	nucleus	68.24	69.43
GSMUA_Achr10P...	Banana	nucleus	66.95	68.72
VIT_12s0034g01000.t01	Wine grape	nucleus	67.38	68.56
KRH43991	Soybean	endoplasmic reticulum	66.95	68.12
PGSC0003DMT400061021	Potato	nucleus	64.81	65.94
Solyc01g104470.2.1	Tomato	nucleus	64.81	65.94
CDY64691	Canola	nucleus	61.37	62.45
CDY36122	Canola	nucleus	61.37	62.45
Bra012490.1-P	Field mustard	nucleus	61.37	62.45
Bra010982.1-P	Field mustard	nucleus	61.37	62.45
Bra024770.1-P	Field mustard	nucleus	60.94	62.01
AT1G25260.1	Thale cress	nucleus	60.94	60.43
Zm00001d003202_P002	Maize	cytosol	51.93	59.9
GSMUA_Achr4P18800_001	Banana	mitochondrion	31.33	49.32
CDY51987	Canola	cytosol, nucleus, plastid	61.37	47.67
CDY18189	Canola	cytosol	22.32	39.1

Protein Annotations

MapMan:17.1.2.2.2.6	Gene3D:3.30.70.1730	Gene3D:3.90.105.20	EntrezGene:4349548	ProteinID:ABA91065.1	EMBL:AK067673
ProteinID:BAF27377.1	ProteinID:BAT12307.1	ProteinID:EAZ19362.1	GO:GO:0000027	GO:GO:0000956	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005840
GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016043	GO:GO:0042254	InterPro:Mrt4	EnsemblPlantsGene:Os11g0105400	EnsemblPlants:Os11t0105400-01	PFAM:PF00466
PANTHER:PTHR21141	PANTHER:PTHR21141:SF37	UniProt:Q2RBN3	InterPro:Ribosomal_L10P	SUPFAM:SSF160369	UniParc:UPI000068261F
RefSeq:XP_015615293.1	:	:	:	:	:

Description

Ribosomal protein L10 family protein. (Os11t0105400-01)

Coordinates

chr11:-:252427..254863

Molecular Weight (calculated)

26553.9 Da

IEP (calculated)

9.321

GRAVY (calculated)

-0.573

Length

233 amino acids

Sequence
(BLAST)

001: MPKSKRNRPV TLSKTKKKPG LERKGKVVTD IKDAVEHYAN AYVFTYDNMR NQKLKDLREQ LKSSSRIFLA GKKVMQIALG RSSADEAKTG LHKLSKFLQG
101: DTGLFFTNLP RDDVERLFRE FEEHDFARTG SIVTETVELK EGPLEQFTHE MEPFLRKQGL PVRLNKGAVE LVADHIVCEE GKPISPEAAQ TLRLLGMQMA
201: TFRLYLVCRW SSDDFEVYKE GLAQLRAEAD DSS

Best Arabidopsis Sequence Match ( AT1G25260.1 )
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS

Arabidopsis Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.