Factsheet for Solyc01g104470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061021	Potato	nucleus	99.13	99.13
KRH43991	Soybean	endoplasmic reticulum	83.41	83.41
VIT_12s0034g01000.t01	Wine grape	nucleus	82.53	82.53
KRH10455	Soybean	nucleus	82.53	82.53
GSMUA_Achr10P...	Banana	nucleus	75.11	75.77
Bra010982.1-P	Field mustard	nucleus	75.11	75.11
CDY64691	Canola	nucleus	75.11	75.11
CDY36122	Canola	nucleus	75.11	75.11
Bra012490.1-P	Field mustard	nucleus	75.11	75.11
Bra024770.1-P	Field mustard	nucleus	74.67	74.67
AT1G25260.1	Thale cress	nucleus	71.18	69.36
KXG22766	Sorghum	mitochondrion	69.0	68.4
EES09085	Sorghum	mitochondrion	68.56	67.97
TraesCS5A01G153300.1	Wheat	nucleus	67.69	66.24
TraesCS5D01G158600.1	Wheat	nucleus	67.25	65.81
TraesCS5B01G152500.1	Wheat	nucleus	67.25	65.81
Os11t0105400-01	Rice	nucleus	65.94	64.81
Zm00001d044615_P001	Maize	nucleus	68.12	62.65
HORVU5Hr1G047980.5	Barley	cytosol, nucleus	63.32	61.97
Os12t0105200-00	Rice	cytosol, nucleus	64.19	61.25
Zm00001d005089_P005	Maize	mitochondrion	62.01	59.66
CDY51987	Canola	cytosol, nucleus, plastid	74.67	57.0
GSMUA_Achr4P18800_001	Banana	mitochondrion	31.88	49.32
CDY18189	Canola	cytosol	27.51	47.37
Zm00001d003202_P002	Maize	cytosol	40.17	45.54

Protein Annotations

MapMan:17.1.2.2.2.6	Gene3D:3.30.70.1730	Gene3D:3.90.105.20	GO:GO:0000027	GO:GO:0000956	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006139	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016043	GO:GO:0022626
GO:GO:0042254	UniProt:K4B222	InterPro:Mrt4	PFAM:PF00466	PANTHER:PTHR21141	PANTHER:PTHR21141:SF37
InterPro:Ribosomal_L10P	SUPFAM:SSF160369	EnsemblPlantsGene:Solyc01g104470.2	EnsemblPlants:Solyc01g104470.2.1	UniParc:UPI00027689B4	SEG:seg

Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:K4B222]

Coordinates

chr1:-:92932811..92935966

Molecular Weight (calculated)

26465.7 Da

IEP (calculated)

8.899

GRAVY (calculated)

-0.676

Length

229 amino acids

Sequence
(BLAST)

001: MPKSKRNRAV TLSKTKKKGK EHKENIVNSI RECAEKYSSA YVFSFENMRN LKFKEFRDQL KSSSRFFLGS NKVMQVALGR SDSDEIRPGL HKISKLVRGD
101: SGLCFTNLSK EEVQRLFNEY EEHDFARTGT TATEKVELQE GPLDQFTHEM EPFLRKQGMP VRLNRGVVEL VSDFVVCEEG RPLSPEAARI LRLLGKKMAT
201: FRLNLICRWS PDEFEIYREG LEESDIESS

Best Arabidopsis Sequence Match ( AT1G25260.1 )
(BLAST)

001: MPKSKRDRPV TLSKTKKKGR EHKECIVNGI REAVEKYSSV YVFSFENMRN IKFKEFRQQF RHNGKFFLGS NKVMQVALGR SAEDELRSGI YKVSKLLRGD
101: TGLLVTDMPK EEVESLFNAY EDSDFSRTGS IAVETVELKE GPLEQFTHEM EPLLRKLEMP VRLNKGTVEL VADFVVCEEG KQLSPKSAHI LRLLRMKMAT
201: FKLNLLCRWS PSDFELYRED LSELYREDLS DVETS

Arabidopsis Description

Ribosome assembly factor mrt4 [Source:UniProtKB/TrEMBL;Acc:Q94AK8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.