Factsheet for VIT_05s0051g00300.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g032250.1.1	Tomato	cytosol	31.53	49.3
KRH09430	Soybean	cytosol	27.03	44.12
KRH09419	Soybean	cytosol, plasma membrane, plastid	22.52	32.47
AT1G72930.1	Thale cress	cytosol	38.74	24.43
CDX96441	Canola	cytosol	39.64	19.73
CDY59925	Canola	cytosol	41.44	18.7
KRH53793	Soybean	cytosol	36.94	18.47
KRG89385	Soybean	cytosol	32.43	16.82
AT1G72920.1	Thale cress	cytosol	40.54	16.36
CDY11138	Canola	cytosol, plastid	37.84	15.85
KRH08587	Soybean	cytosol	36.04	14.71
CDX96440	Canola	cytosol	42.34	12.5
AT1G72900.1	Thale cress	cytosol	39.64	12.12
AT1G72910.1	Thale cress	cytosol	41.44	12.11
AT1G17615.1	Thale cress	cytosol, plastid	40.54	11.84
CDX72959	Canola	cytosol	40.54	11.81
Bra016028.1-P	Field mustard	cytosol	39.64	11.64
CDX96438	Canola	cytosol	39.64	11.64
AT1G72950.1	Thale cress	cytosol	39.64	11.61
AT1G72940.1	Thale cress	cytosol	38.74	11.59
CDY26232	Canola	cytosol	39.64	11.4
CDY48315	Canola	cytosol	39.64	11.4
Bra025962.1-P	Field mustard	cytosol	39.64	11.4
Bra016029.1-P	Field mustard	plastid	41.44	10.8
CDY11139	Canola	plastid	37.84	10.69
CDX72960	Canola	plastid	41.44	10.48
Bra003864.1-P	Field mustard	mitochondrion	40.54	10.47
CDY67955	Canola	mitochondrion	38.74	9.98
CDY11140	Canola	mitochondrion	38.74	9.95
CDX72958	Canola	plastid	38.74	9.89
CDX96439	Canola	mitochondrion, plastid	35.14	9.63
Bra016027.1-P	Field mustard	plastid	35.14	9.54
Bra008060.1-P	Field mustard	plastid	37.84	9.25
AT1G72890.2	Thale cress	mitochondrion, plastid	40.54	9.24
CDY48026	Canola	mitochondrion	37.84	9.03
KRH64151	Soybean	cytosol	35.14	8.41
CDX72961	Canola	cytosol, plastid	39.64	7.67
Bra016026.1-P	Field mustard	cytosol	41.44	4.03
CDY16898	Canola	plastid	18.02	3.64
Bra003863.1-P	Field mustard	cytosol, plastid	34.23	3.17
CDX68251	Canola	cytosol, plastid	33.33	3.11
CDX96442	Canola	cytosol	9.91	1.39
CDX96437	Canola	golgi, mitochondrion	2.7	0.98

Protein Annotations

Gene3D:3.40.50.10140	MapMan:35.2	ProteinID:CCB57498	ProteinID:CCB57498.1	UniProt:F6HS39	EMBL:FN596241
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	InterPro:IPR000157	InterPro:IPR035897	PFAM:PF01582	PFscan:PS50104	PANTHER:PTHR11017
SUPFAM:SSF52200	InterPro:TIR_dom	InterPro:Toll_tir_struct_dom_sf	UniParc:UPI0002108E7B	ArrayExpress:VIT_05s0051g00300	EnsemblPlantsGene:VIT_05s0051g00300
EnsemblPlants:VIT_05s0051g00300.t01	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:10802452..10807026

Molecular Weight (calculated)

12404.5 Da

IEP (calculated)

7.631

GRAVY (calculated)

-0.540

Length

111 amino acids

Sequence
(BLAST)

001: MASSSTHRAS SSTTSISRNY DVFLSFRGGD TRRNFTDHLY TTLTASGIQT FRDDEELEKG GDIASDLLRA IEESRLIKCA KLGDSNSRRL NILLDKLVHT
101: NLHQLSHGCP Y

Best Arabidopsis Sequence Match ( AT1G72920.1 )
(BLAST)

001: MSSPTATKYD VFLSFRGLDT RRNFISFLYK ELVRRKIRTF KDDKELENGR RISPELKRAI EESKFAVVVV SVNYAASPWC LDELVKIMDF ENKGSITVMP
101: IFYGVDPCHL RRQIGDVAEQ FKKHEAREED HEKVASWRRA LTSLASISGE CSLKWEDEAN LVDEIADKIS KNLMTVTTIS NGRDLVGIDT HMKALNKKLD
201: LNSNKSLRVV GIWARGYNGR SALAKYVYQD ICHWLKVGWL KVYQDIKTAS KLYVLTRWLK VAHLLHRSHH SFKTE

Arabidopsis Description

Similar to part of disease resistance protein [Source:UniProtKB/TrEMBL;Acc:Q9SSN4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.