Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G72930.1 | Thale cress | cytosol | 46.55 | 72.73 |
| AT1G72940.1 | Thale cress | cytosol | 83.64 | 61.99 |
| CDX96441 | Canola | cytosol | 47.27 | 58.3 |
| CDY59925 | Canola | cytosol | 49.45 | 55.28 |
| AT1G72900.1 | Thale cress | cytosol | 69.09 | 52.34 |
| AT1G72950.1 | Thale cress | cytosol | 68.36 | 49.6 |
| CDX96440 | Canola | cytosol | 64.36 | 47.07 |
| Solyc02g032250.1.1 | Tomato | cytosol | 12.0 | 46.48 |
| CDX72959 | Canola | cytosol | 62.55 | 45.14 |
| AT1G72910.1 | Thale cress | cytosol | 61.82 | 44.74 |
| Bra016028.1-P | Field mustard | cytosol | 58.91 | 42.86 |
| CDX96438 | Canola | cytosol | 58.91 | 42.86 |
| VIT_05s0051g00300.t01 | Wine grape | plastid | 16.36 | 40.54 |
| AT1G17615.1 | Thale cress | cytosol, plastid | 55.64 | 40.26 |
| KRH09430 | Soybean | cytosol | 9.82 | 39.71 |
| KRH09419 | Soybean | cytosol, plasma membrane, plastid | 9.82 | 35.06 |
| KRH53793 | Soybean | cytosol | 26.55 | 32.88 |
| KRH08587 | Soybean | cytosol | 32.0 | 32.35 |
| KRG89385 | Soybean | cytosol | 24.73 | 31.78 |
| CDX72961 | Canola | cytosol, plastid | 63.27 | 30.31 |
| AT1G72890.2 | Thale cress | mitochondrion, plastid | 52.0 | 29.36 |
| KRH64151 | Soybean | cytosol | 29.09 | 17.24 |
| Bra016026.1-P | Field mustard | cytosol | 63.64 | 15.34 |
Protein Annotations
| MapMan:26.8.2.1 | Gene3D:3.40.50.10140 | EntrezGene:843623 | ProteinID:AAD55639.1 | ProteinID:AEE35391.1 | ArrayExpress:AT1G72920 |
| EnsemblPlantsGene:AT1G72920 | RefSeq:AT1G72920 | TAIR:AT1G72920 | RefSeq:AT1G72920-TAIR-G | EnsemblPlants:AT1G72920.1 | TAIR:AT1G72920.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009611 | GO:GO:0009987 | InterPro:IPR000157 | InterPro:IPR035897 | RefSeq:NP_177435.1 |
| PFAM:PF01582 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001185 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009009 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PFscan:PS50104 | PANTHER:PTHR43904 | UniProt:Q9SSN4 | SMART:SM00255 | SUPFAM:SSF52200 |
| InterPro:TIR_dom | InterPro:Toll_tir_struct_dom_sf | UniParc:UPI00000A78F3 | SEG:seg | : | : |
Description
Similar to part of disease resistance protein [Source:UniProtKB/TrEMBL;Acc:Q9SSN4]
Coordinates
chr1:+:27437899..27439209
Molecular Weight (calculated)
31797.3 Da
IEP (calculated)
9.879
GRAVY (calculated)
-0.385
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSPTATKYD VFLSFRGLDT RRNFISFLYK ELVRRKIRTF KDDKELENGR RISPELKRAI EESKFAVVVV SVNYAASPWC LDELVKIMDF ENKGSITVMP
101: IFYGVDPCHL RRQIGDVAEQ FKKHEAREED HEKVASWRRA LTSLASISGE CSLKWEDEAN LVDEIADKIS KNLMTVTTIS NGRDLVGIDT HMKALNKKLD
201: LNSNKSLRVV GIWARGYNGR SALAKYVYQD ICHWLKVGWL KVYQDIKTAS KLYVLTRWLK VAHLLHRSHH SFKTE
101: IFYGVDPCHL RRQIGDVAEQ FKKHEAREED HEKVASWRRA LTSLASISGE CSLKWEDEAN LVDEIADKIS KNLMTVTTIS NGRDLVGIDT HMKALNKKLD
201: LNSNKSLRVV GIWARGYNGR SALAKYVYQD ICHWLKVGWL KVYQDIKTAS KLYVLTRWLK VAHLLHRSHH SFKTE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.