Factsheet for Bra016026.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96440	Canola	cytosol	30.67	93.09
Bra016028.1-P	Field mustard	cytosol	25.42	76.72
Bra003863.1-P	Field mustard	cytosol, plastid	79.23	75.33
AT1G72950.1	Thale cress	cytosol	22.7	68.34
AT1G72940.1	Thale cress	cytosol	21.47	66.04
AT1G72930.1	Thale cress	cytosol	10.08	65.34
AT1G72920.1	Thale cress	cytosol	15.34	63.64
AT1G72900.1	Thale cress	cytosol	19.72	61.98
Bra025962.1-P	Field mustard	cytosol	19.54	57.77
AT1G72910.1	Thale cress	cytosol	18.84	56.58
Bra016029.1-P	Field mustard	plastid	17.7	47.42
Bra008060.1-P	Field mustard	plastid	18.14	45.59
Solyc02g032250.1.1	Tomato	cytosol	2.8	45.07
Bra003864.1-P	Field mustard	mitochondrion	16.91	44.88
Bra016027.1-P	Field mustard	plastid	15.6	43.52
VIT_05s0051g00300.t01	Wine grape	plastid	4.03	41.44
KRH09430	Soybean	cytosol	2.45	41.18
KRH08587	Soybean	cytosol	9.38	39.34
KRH09419	Soybean	cytosol, plasma membrane, plastid	2.45	36.36
KRH53793	Soybean	cytosol	7.01	36.04
KRG89385	Soybean	cytosol	6.49	34.58
KRH64151	Soybean	cytosol	9.2	22.63

Protein Annotations

MapMan:13.7.2.2	MapMan:26.8.2.1	Gene3D:3.40.50.10140	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra016026	EnsemblPlants:Bra016026.1
EnsemblPlants:Bra016026.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	InterPro:G_GB1_RHD3_dom	InterPro:IPR000157
InterPro:IPR030386	InterPro:IPR035897	UniProt:M4DHP9	HAMAP:MF_03109	InterPro:P-loop_NTPase	PFAM:PF01582
PFAM:PF05879	PFscan:PS50104	PFscan:PS51715	PANTHER:PTHR11649	PANTHER:PTHR11649:SF81	InterPro:RHD3/Sey1
SMART:SM00255	SUPFAM:SSF52200	SUPFAM:SSF52540	InterPro:TIR_dom	InterPro:Toll_tir_struct_dom_sf	UniParc:UPI0002541CB3
SEG:seg	:	:	:	:	:

Description

AT1G72960 (E=0.0) | root hair defective 3 GTP-binding (RHD3) family protein

Coordinates

chrA07:+:19779261..19789173

Molecular Weight (calculated)

128319.0 Da

IEP (calculated)

6.923

GRAVY (calculated)

-0.285

Length

1141 amino acids

Sequence
(BLAST)

0001: MSSSITPTTS LRKYDVFLSF RGPDTRRNFI SFLYKELVQR NIRTFKDDKE LESGQRISPE LDRAIEESKF AVVVVSANYA ASTWCLEELV KIMDVENKGS
0101: LTVIPVFHGV DPCHVRRQIG QVAVQLEKHE MREDREKVLS WRQALTNLAS ISGVCTLKWE DDSMMVDEIA KRISTVIDTT RKPTRTGSNL VGIDAHMKAL
0201: SRLVDLNSSK KNVRVVGIWA RGGNGRSALA KFVYQNICQH FESHCFLENV KRTSQDRHMS HLRQEVLKRV QVESNQKVLL VANEVNKLEH FDALAEDFSC
0301: FGPGSIVIIT TQDKQLLVSA GIKLVYEVEL LRFRKVRELF RQLGFRVRER AIESVLYKSE GCCSVQLIDG DGIYNVSGID HFIKEVKLGE CGLSYAVVSI
0401: MGPQSSGKST LLNSLFGTNF MEMDAFKGRS QTTKGIWLAR CAGIEPCTLV MDLEGTDGRE RGEDDTAFEK QSALFALAIS DIVLINMWCH DIGREQAANK
0501: PLLKTVFQVM MRLFSPRKTT MLFVIRDKTR TPLENLEPVL REDIQKIWDS VPKPEAHKET PMSDFFNVEV VALSSYEEKE EQFKEQVASL RQRFMHSIAP
0601: GGLAGDRRGV IPASGFAFSA DQIWRVIKEN KDLDLPAHKV MVATVRCEEI ANEKFSHFIS NEDWRKLDEE VQAGPVSNFG KRLTSILGSC LSEYDGEATF
0701: FDEGVRSSKR HQLQEKLLQL VNPAFQDVLG HIRFGMLEKF KASFDKALEI GEGFSSASSA WFKSCMAQFD EECAGAIVEQ ADWDTAKVRD KLVRDIEVHI
0801: SSIRTSKLSE LTSQYESKLH GALSEPVEAL LEGANDETWR TVKKLHRRET ESAVSGFSSA LACFDIEEEI RDKMVKSLQE YSRGVIESKA KEEAGRVLMR
0901: MKERFGTIFS HDSDSMPRVW TGKEDIRAIT KAARSASLKL LSVMVVIRLG DETDNIEKTL SVALLDPTTS KKSITASDPL ASSTWDEIPS SRTLITPVQC
1001: KSIWRQFKTE TEYTEANKRG SNWLPPPWAI LALILLGFNE FMTLLRNPLY LGLLFVGFLL LKALWTQLDI PGEFRNGVVP GLISISAKFV PTVMNLLKNL
1101: AAEGEAPPTA NPENRRPSNN TSSHASSSEN PTEHKSGSKT D

Best Arabidopsis Sequence Match ( AT1G72960.1 )
(BLAST)

001: MDADKSEGCC SVQLIDGDGI YNVSRIDHFI KDVKLADCGL SYAVVSIMGP QSSGKSTLLN HLFGTNFMEM DAFKGRSQTT KGIWLARCAG IEPCTLVMDL
101: EGTDGRERGE DDTAFEKQSA LFALAISDIV LINMWCHDIG REQAANKPLL KTVFQVMMRL FSPRKTTMLF VIRDKTRTPL ENLEPVLRED IQKIWDSVPK
201: PEAHKETPLS DFFNVEVVAL SSYEEKEEQF KEQIASLRQR FMHSIAPGGL AGDRRGVIPA SGFAFSADQI WRVIKENKDL DLPAHKVMVA TVRCEEIANE
301: KFAHFITNED WRKLDEEVQA GPVSNFGKRL TTILGSCLSE YDGEATFFDE GVRSSKRQQL EEKLLQLVNP AFQDVLGHIR WGILEKFKAS FDKALGIGEG
401: FSSASQDWFK ACMTQFDEEC AGAIIEQANW DTSKVRDKLV RDIEAHISSV RTSKLSELTS LYESKVHEAL SEPVEALLDG ANDETWSTVK KLHRRETESA
501: VSGLSSALAG FDMEEETRDR MVKSLQDYAR GVIETKAKEE AVRVLMRMKE RFGTIFSHDS DSMPRVWTGK EDLRAITKSA RSASLKLLSV MAVIRLGDEP
601: DNIEKTLTVA LLDPTKNDTS KKSITTSDPL ASSTWDEVPS SRTLITPVQC KSIWRQFKTE TEYTVTQAIS AQEANRRGNN WLPPPWAILA LIVLGFNEFM
701: TLLRNPLYLG VMFVAFLLAK ALWTQLDIPG EFRNGALPGL ISISAKFVPT VMNLIKNLAA QGEDPPAANP ENRRSSNNTS SSENPPDHKS SSKED

Arabidopsis Description

Protein ROOT HAIR DEFECTIVE 3 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSN0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.