Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G72920.1 | Thale cress | cytosol | 61.99 | 83.64 |
| AT1G72950.1 | Thale cress | cytosol | 77.63 | 75.99 |
| AT1G72900.1 | Thale cress | cytosol | 72.24 | 73.83 |
| AT1G72930.1 | Thale cress | cytosol | 34.77 | 73.3 |
| CDX96440 | Canola | cytosol | 67.92 | 67.02 |
| CDX72959 | Canola | cytosol | 68.73 | 66.93 |
| AT1G72910.1 | Thale cress | cytosol | 65.5 | 63.95 |
| CDX96438 | Canola | cytosol | 64.42 | 63.23 |
| Bra016028.1-P | Field mustard | cytosol | 64.15 | 62.96 |
| CDX96441 | Canola | cytosol | 35.04 | 58.3 |
| AT1G17615.1 | Thale cress | cytosol, plastid | 59.3 | 57.89 |
| CDY59925 | Canola | cytosol | 37.47 | 56.5 |
| Solyc02g032250.1.1 | Tomato | cytosol | 8.63 | 45.07 |
| CDX72961 | Canola | cytosol, plastid | 66.58 | 43.03 |
| AT1G72890.2 | Thale cress | mitochondrion, plastid | 53.37 | 40.66 |
| VIT_05s0051g00300.t01 | Wine grape | plastid | 11.59 | 38.74 |
| KRH09430 | Soybean | cytosol | 7.01 | 38.24 |
| KRH08587 | Soybean | cytosol | 26.15 | 35.66 |
| KRH09419 | Soybean | cytosol, plasma membrane, plastid | 7.28 | 35.06 |
| KRH53793 | Soybean | cytosol | 19.41 | 32.43 |
| KRG89385 | Soybean | cytosol | 17.79 | 30.84 |
| KRH64151 | Soybean | cytosol | 26.95 | 21.55 |
| Bra016026.1-P | Field mustard | cytosol | 66.04 | 21.47 |
Protein Annotations
| MapMan:26.8.2.1 | Gene3D:3.40.50.10140 | Gene3D:3.40.50.300 | EntrezGene:843625 | ProteinID:AAD55641.1 | ProteinID:AEE35394.1 |
| ArrayExpress:AT1G72940 | EnsemblPlantsGene:AT1G72940 | RefSeq:AT1G72940 | TAIR:AT1G72940 | RefSeq:AT1G72940-TAIR-G | EnsemblPlants:AT1G72940.1 |
| TAIR:AT1G72940.1 | EMBL:AY064998 | EMBL:AY149960 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0043531 |
| InterPro:IPR000157 | InterPro:IPR035897 | InterPro:NB-ARC | RefSeq:NP_177437.1 | InterPro:P-loop_NTPase | PFAM:PF00931 |
| PFAM:PF01582 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50104 | PANTHER:PTHR43904 | UniProt:Q9SSN2 | SMART:SM00255 | SUPFAM:SSF52200 |
| SUPFAM:SSF52540 | InterPro:TIR_dom | InterPro:Toll_tir_struct_dom_sf | UniParc:UPI00000AC162 | SEG:seg | : |
Description
At1g72940/F3N23_14 [Source:UniProtKB/TrEMBL;Acc:Q9SSN2]
Coordinates
chr1:+:27441981..27443859
Molecular Weight (calculated)
42298.0 Da
IEP (calculated)
9.388
GRAVY (calculated)
-0.284
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSPTATKYD VFLSFRGVDT RRNFISFLYK EFVRRKIRTF KDDKELENGR RISPELKRAI EESKFAVVVV SVNYAASPWC LDELVKIMDF ENKGSITVMP
101: IFYGVDPCHL RRQIGDVAEQ FKKHEAREED HEKVASWRRA LTSLASISGD CSSKCEDEAK LVDEIADKIS KNLMTVTTIS NGKNLVGIDT HMKALNKKLD
201: LNSNKSLRVV GIWARGYNGR SALAKYVYQD ICHHFDSHCF LGSVKRISQG RHLSHLHEEF LIRIQGSKHN LKDQKVLLVA DDVYKLEQLD ALAEDFNGFG
301: PGSVVIITTQ DKHLFVSAGI KLVYEVELLK FQKVCELFRQ FAFKKRDISA AVKLVYYRAT NWLGCLSGRS G
101: IFYGVDPCHL RRQIGDVAEQ FKKHEAREED HEKVASWRRA LTSLASISGD CSSKCEDEAK LVDEIADKIS KNLMTVTTIS NGKNLVGIDT HMKALNKKLD
201: LNSNKSLRVV GIWARGYNGR SALAKYVYQD ICHHFDSHCF LGSVKRISQG RHLSHLHEEF LIRIQGSKHN LKDQKVLLVA DDVYKLEQLD ALAEDFNGFG
301: PGSVVIITTQ DKHLFVSAGI KLVYEVELLK FQKVCELFRQ FAFKKRDISA AVKLVYYRAT NWLGCLSGRS G
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.