CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96440	Canola	cytosol	57.67	88.03
CDX72959	Canola	cytosol	55.57	83.73
CDX96438	Canola	cytosol	51.57	78.31
AT1G72950.1	Thale cress	cytosol	45.82	69.39
AT1G72940.1	Thale cress	cytosol	43.03	66.58
CDX96441	Canola	cytosol	25.44	65.47
AT1G72920.1	Thale cress	cytosol	30.31	63.27
AT1G72930.1	Thale cress	cytosol	19.34	63.07
CDY59925	Canola	cytosol	26.48	61.79
AT1G72900.1	Thale cress	cytosol	38.33	60.61
CDY48315	Canola	cytosol	39.37	58.55
CDY26232	Canola	cytosol	38.85	57.77
AT1G72910.1	Thale cress	cytosol	36.24	54.74
CDX72958	Canola	plastid	34.67	45.75
Solyc02g032250.1.1	Tomato	cytosol	5.57	45.07
CDY11139	Canola	plastid	30.66	44.78
CDY11140	Canola	mitochondrion	33.28	44.21
CDX72960	Canola	plastid	33.8	44.19
CDY11138	Canola	cytosol, plastid	20.21	43.77
CDX96439	Canola	mitochondrion, plastid	30.66	43.46
CDY67955	Canola	mitochondrion	32.58	43.39
CDY48026	Canola	mitochondrion	35.02	43.23
KRH09430	Soybean	cytosol	5.05	42.65
VIT_05s0051g00300.t01	Wine grape	plastid	7.67	39.64
KRH08587	Soybean	cytosol	18.29	38.6
CDX96437	Canola	golgi, mitochondrion	19.51	36.72
KRH09419	Soybean	cytosol, plasma membrane, plastid	4.88	36.36
KRH53793	Soybean	cytosol	13.76	35.59
KRG89385	Soybean	cytosol	12.89	34.58
CDX68251	Canola	cytosol, plastid	47.56	22.94
KRH64151	Soybean	cytosol	16.9	20.91
CDY16898	Canola	plastid	13.59	14.18
CDX96442	Canola	cytosol	10.8	7.85

Protein Annotations

MapMan:13.7.2.2	MapMan:26.8.2.1	Gene3D:3.40.50.10140	Gene3D:3.40.50.300	GO:A0A078C780	EnsemblPlants:CDX72961
ProteinID:CDX72961	ProteinID:CDX72961.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005525	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00103388001
InterPro:G_GB1_RHD3_dom	InterPro:IPR000157	InterPro:IPR030386	InterPro:IPR035897	InterPro:P-loop_NTPase	PFAM:PF01582
PFAM:PF05879	PFscan:PS50104	PFscan:PS51715	PANTHER:PTHR43904	InterPro:RHD3/Sey1	SMART:SM00255
SUPFAM:SSF52200	SUPFAM:SSF52540	InterPro:TIR_dom	InterPro:Toll_tir_struct_dom_sf	UniParc:UPI0004EDBBF5	:

Description

BnaC06g34090D

Coordinates

chrLK031797:+:1330425..1333868

Molecular Weight (calculated)

65137.5 Da

IEP (calculated)

9.314

GRAVY (calculated)

-0.223

Length

574 amino acids

Sequence
(BLAST)

001: MSSSITPSTS LRKYDVFLSF RGLDTRRSFI SFLYKELVRR NIRTFKDDKD LESGRKISPE LERAIEESKF AVVVISANYA ASTWCLEELV KIMDVENKDS
101: LTVIPVFHGV DPCHVRRQIG QVAVQLEKHE KREDREKVLS WRQALTNLAS ISGVCTLKWE DDSMMVDEIA KRISTLIDTT RKPTRTGSNL VGIDAHMKAL
201: SRLLDLNSKK NVRVVGIWAR GGNGRSALAK FVYRNICQHF ESHCFLENVK RISQDRHMSH LRQEVLKRVQ VESNSNQKVL LVANEVNELE HFDALAEDFS
301: CFGPGSIVII TTQDKQLLVS AGIKLVYEVE LLRFRKVREL FRQLAFRDRA FSAAFESVLY RGTNLAMEWL GCLGVRSDSS DGCCSVQLID GDGIYNVSGI
401: DHFIKEVKLG ECGLSYAVVS IMGPQSSGKK STLLNSLFGT NFMEMDAFKG RSQTTKGIWL ARCAGARRGY SLSHYHFGLV CDIDSDDTAF EKQIFSLHSK
501: RSASANKPLL KTVFQVFILF SPRKTTMLFV IRNKTRTPLE NLEPVVTEDI RKIWDSVPKP EAYRVTPRFW GPDI

Best Arabidopsis Sequence Match ( AT1G72950.1 )
(BLAST)

001: MSDSSNTLPK FDVFLSFRGL DTRRSFISFL YKELIRRNIR TFKDDKELKN GRRITPELIR AIEGSRFAVV VVSVNYAASR WCLEELVKIM DFENMGSLKV
101: MPIFYGVDPC HVRRQIGEVA EQFKKHEGRE DHEKVLSWRQ ALTNLASISG DCSWKWEDDS KMVEEITDRI SKELMIDTTR SNGSDLEGID AHMKALHRLL
201: NLNSKKSVRV IGIWARGGNG RSALAKFVYQ NICQHFESHC FLESVKRISQ DRHLSHLHEE FMIRIQGECL SKLRLKNQKV LLVADDVNKL EQLDALAEDF
301: NCFGPGSIVI ITTQDRQLLI SAGIKLVYEV ELLRFQKVRG LFRQLAFKEK DISAAFEVSL YRATNVAMEW LGCICGRSG

Arabidopsis Description

Disease resistance protein (TIR-NBS class) [Source:UniProtKB/TrEMBL;Acc:Q9SSN1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.