CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003863.1-P	Field mustard	cytosol, plastid	97.98	97.17
CDY11139	Canola	plastid	29.24	88.55
CDY11138	Canola	cytosol, plastid	14.87	66.79
CDY11140	Canola	mitochondrion	23.36	64.35
CDY67955	Canola	mitochondrion	23.11	63.81
CDX72958	Canola	plastid	21.43	58.62
CDX72960	Canola	plastid	21.43	58.09
CDX96439	Canola	mitochondrion, plastid	19.5	57.28
CDY48026	Canola	mitochondrion	21.09	53.98
AT1G72890.2	Thale cress	mitochondrion, plastid	21.34	52.16
CDY26232	Canola	cytosol	16.05	49.48
CDX96437	Canola	golgi, mitochondrion	12.61	49.18
CDY48315	Canola	cytosol	15.8	48.7
CDX72961	Canola	cytosol, plastid	22.94	47.56
CDX96440	Canola	cytosol	14.71	46.54
CDX72959	Canola	cytosol	14.79	46.19
CDX96438	Canola	cytosol	14.29	44.97
CDX96441	Canola	cytosol	7.82	41.7
CDY59925	Canola	cytosol	8.32	40.24
Solyc02g032250.1.1	Tomato	cytosol	2.27	38.03
CDX96442	Canola	cytosol	23.45	35.32
KRH09430	Soybean	cytosol	2.02	35.29
KRH08587	Soybean	cytosol	7.65	33.46
VIT_05s0051g00300.t01	Wine grape	plastid	3.11	33.33
KRH09419	Soybean	cytosol, plasma membrane, plastid	2.02	31.17
KRH53793	Soybean	cytosol	5.8	31.08
KRG89385	Soybean	cytosol	5.55	30.84
KRH64151	Soybean	cytosol	8.49	21.77
CDY16898	Canola	plastid	6.3	13.64

Protein Annotations

MapMan:13.7.2.2	MapMan:26.8.2.1	Gene3D:3.40.50.10140	Gene3D:3.40.50.300	GO:A0A078BTX6	EnsemblPlants:CDX68251
ProteinID:CDX68251	ProteinID:CDX68251.1	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005525	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987
GO:GO:0043531	EnsemblPlantsGene:GSBRNA2T00099529001	InterPro:G_GB1_RHD3_dom	InterPro:IPR000157	InterPro:IPR030386	InterPro:IPR035897
HAMAP:MF_03109	InterPro:NB-ARC	InterPro:P-loop_NTPase	PFAM:PF00931	PFAM:PF01582	PFAM:PF05879
PFscan:PS50104	PFscan:PS51715	PANTHER:PTHR11649	PANTHER:PTHR11649:SF81	InterPro:RHD3/Sey1	SMART:SM00255
SUPFAM:SSF52200	SUPFAM:SSF52540	InterPro:TIR_dom	InterPro:Toll_tir_struct_dom_sf	UniParc:UPI0004EDB244	SEG:seg

Description

BnaA07g22910D

Coordinates

chrLK031787:-:4620867..4627693

Molecular Weight (calculated)

133336.0 Da

IEP (calculated)

6.694

GRAVY (calculated)

-0.286

Length

1190 amino acids

Sequence
(BLAST)

0001: MNTILQNVSC FKRKVSSGRP FDSRSLSSSS TPQKYDVFLS FRGADTRKNF VSFLYKQLET KGIRAFKDDN ALVCGRSIAP VIVQGIKGST IAVVVISPTY
0101: PASFWCLEEL VMILKLEREK LLTVVPIFYE VEPNDLKRQT GKLVKQFKKH EKRHSTERVH SWRDALNRLA TLSGDCSKIS EDDATLVDRV TERISKILSS
0201: NVISFDEHMK RLYPLLDLNS NEGVQVSGIW GRGSKGRSAF AKHVYKNISP DFEAHCFLED VRNISLHLQE EELLSKMQGE VLMSTKSSHM CLDAIKARLG
0301: NKKVLLVAND VDKIEKLDAL ADEFSWFGPG SRIIIVTQDK HLLSSWGVKS VYEVELLRCC EVRKLWRSEA IIRRDDHVGS ELSFPTLICN DKSEGNCSVQ
0401: LIDGDGTYNV SGIDHFIKEV KLGECGLSYA VVSIMGPQSS GKSTLLNNLF GTNFMEMDAF KGRSQTTKGI WLARCAGIEP CTLVMDLEGT DGRERGEDDT
0501: AFEKQSALFA LAISDIVLIN MWCHDIGREQ AANKPLLKTV FQVMMRLFSP RKTTMLFVIR DKTRTPLENL EPVLREDIQK IWDSVPKPEA HKETPMSDFF
0601: NVEVVALSSY EEKEEQFKEQ VASLRQRFMH SIAPGGLAGD RRGVIPASGF AFSADQIWRV IKENKDLDLP AHKVMVATVR CEEISNEKFA HFITNEDWRK
0701: LDEEVQAGPV SSFGKRLTSI LGSCLSEYDG EATFFDEGVR SSKRHQLEEK LLQLVNPAFQ DVLGHIRWGM LEKFKASFDK ALEIGEGFSS ASTTWLKACM
0801: DQFDEECAGA IIEQANWDTT KVREKLVRDI EAHVSSVRTS KLSELTSQYE TKLHTALSEP VEALLEGASD QTWTTVKKLH GRETETAVSG FSSALAAFDI
0901: EEETREKMVK SLQEYSRGVI ESKAKEEAGR VLMRMKDRFA TIFSNDADSM PRVWTGNEDL RAITKAARSA SLKLLSVMAV MRLGDETDNI EKTLSVALLD
1001: STTSKKSITA SDPLASSTWD DIPSSRTLIT PVHCKSIWRQ FKTETEYTVT QAISAQAWLL YSQEANKRGS NWLPPPWAIF ALIILGFNEF MTLLRNPLYL
1101: GVLFVGFLLL KALWTQLDIP GEFRNGALPG IISISAKFVP TVMNLVKNLA AQGETPPTAN PENRRPSNNT SSNASSSDNP TEHKSASKTD

Best Arabidopsis Sequence Match ( AT1G72960.1 )
(BLAST)

001: MDADKSEGCC SVQLIDGDGI YNVSRIDHFI KDVKLADCGL SYAVVSIMGP QSSGKSTLLN HLFGTNFMEM DAFKGRSQTT KGIWLARCAG IEPCTLVMDL
101: EGTDGRERGE DDTAFEKQSA LFALAISDIV LINMWCHDIG REQAANKPLL KTVFQVMMRL FSPRKTTMLF VIRDKTRTPL ENLEPVLRED IQKIWDSVPK
201: PEAHKETPLS DFFNVEVVAL SSYEEKEEQF KEQIASLRQR FMHSIAPGGL AGDRRGVIPA SGFAFSADQI WRVIKENKDL DLPAHKVMVA TVRCEEIANE
301: KFAHFITNED WRKLDEEVQA GPVSNFGKRL TTILGSCLSE YDGEATFFDE GVRSSKRQQL EEKLLQLVNP AFQDVLGHIR WGILEKFKAS FDKALGIGEG
401: FSSASQDWFK ACMTQFDEEC AGAIIEQANW DTSKVRDKLV RDIEAHISSV RTSKLSELTS LYESKVHEAL SEPVEALLDG ANDETWSTVK KLHRRETESA
501: VSGLSSALAG FDMEEETRDR MVKSLQDYAR GVIETKAKEE AVRVLMRMKE RFGTIFSHDS DSMPRVWTGK EDLRAITKSA RSASLKLLSV MAVIRLGDEP
601: DNIEKTLTVA LLDPTKNDTS KKSITTSDPL ASSTWDEVPS SRTLITPVQC KSIWRQFKTE TEYTVTQAIS AQEANRRGNN WLPPPWAILA LIVLGFNEFM
701: TLLRNPLYLG VMFVAFLLAK ALWTQLDIPG EFRNGALPGL ISISAKFVPT VMNLIKNLAA QGEDPPAANP ENRRSSNNTS SSENPPDHKS SSKED

Arabidopsis Description

Protein ROOT HAIR DEFECTIVE 3 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSN0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.