CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68251	Canola	cytosol, plastid	35.32	23.45
CDX72959	Canola	cytosol	8.1	16.8
CDY11139	Canola	plastid	7.97	16.03
CDX72958	Canola	plastid	8.73	15.86
CDX96441	Canola	cytosol	4.43	15.7
CDX96440	Canola	cytosol	7.47	15.69
CDY48026	Canola	mitochondrion	8.99	15.27
CDX72960	Canola	plastid	8.48	15.26
CDX96439	Canola	mitochondrion, plastid	7.59	14.81
CDX96437	Canola	golgi, mitochondrion	5.7	14.75
CDY11138	Canola	cytosol, plastid	4.94	14.72
CDX96438	Canola	cytosol	6.84	14.29
CDY67955	Canola	mitochondrion	7.72	14.15
Solyc02g032250.1.1	Tomato	cytosol	1.27	14.08
CDY48315	Canola	cytosol	6.84	13.99
CDY11140	Canola	mitochondrion	7.59	13.89
CDY59925	Canola	cytosol	4.3	13.82
CDY26232	Canola	cytosol	6.71	13.73
KRH08587	Soybean	cytosol	4.56	13.24
KRH09419	Soybean	cytosol, plasma membrane, plastid	1.27	12.99
KRH53793	Soybean	cytosol	3.42	12.16
KRG89385	Soybean	cytosol	3.29	12.15
CDX72961	Canola	cytosol, plastid	7.85	10.8
KRH09430	Soybean	cytosol	0.89	10.29
VIT_05s0051g00300.t01	Wine grape	plastid	1.39	9.91
KRH64151	Soybean	cytosol	5.57	9.48
CDY16898	Canola	plastid	6.2	8.91

Protein Annotations

MapMan:13.7.2.2	Gene3D:3.40.50.300	GO:A0A078E5T8	EnsemblPlants:CDX96442	ProteinID:CDX96442	ProteinID:CDX96442.1
ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005525	EnsemblPlantsGene:GSBRNA2T00102612001
InterPro:G_GB1_RHD3_dom	InterPro:IPR030386	HAMAP:MF_03109	InterPro:P-loop_NTPase	PFAM:PF05879	PFscan:PS51715
PANTHER:PTHR11649	PANTHER:PTHR11649:SF81	InterPro:RHD3/Sey1	SUPFAM:SSF52540	UniParc:UPI0004EF1D8C	SEG:seg

Description

BnaA07g30530D

Coordinates

chrLK031894:+:862371..866428

Molecular Weight (calculated)

88291.4 Da

IEP (calculated)

5.638

GRAVY (calculated)

-0.288

Length

790 amino acids

Sequence
(BLAST)

001: MLYWSYKSEG CCSVQLIDGD GIYNVSGIDH FIKEVKLGEC GLSYAVVSIM GPQSSGKSTL LNSLFGTNFM EMDAFKGRSQ TTKGIWLARC AGIEPCTLVM
101: DLEGTDGRER GEDDTAFEKQ SALFALAISD IVLINMWCHD IGREQAANKP LLKTVFQVMM RLFSPRKTTM LFVIRDKTRT PLENLEPVLR EDIQKIWDSV
201: PKPEAHKETP MSDFFNVEVV ALSSYEEKEE QFKEQVASLR QRFMHSIAPG GLAGDRRGVI PASGFAFSAD QIWRVIKENK DLDLPAHKVM VATVRCEEIA
301: NEKFSHFISN EDWRKLDEEV QAGPVSNFGK RLTSILGSCL SEYDGEATFF DEGVRSSKRH QLQEKLLQLV NPAFQDVLGH IRFGMLEKFK ASFDKALEIG
401: EGFSSASSAW FKSCMAQFDE ECAGAIVEQA DWDTAKVRDK LVRDIEVHIS SIRTSKLSEL TSQYESKLHG ALSEPVEALL EGANDETWRT VKKLHRRETE
501: SAVSGFSSAL ACFDIEEEIR DKMVKSLQEY SRGVIESKAK EEAGRVLMRM KERFGTIFSH DSDSMPRVWT GKEDIRAITK AARSASLKLL SVMVVIRLGD
601: ETDNIEKTLS VALLDPTTSK KSITASDPLA SSTWDEIPSS RTLITPVQCK SIWRQFKTET EYTEANKRGS NWLPPPWAIL ALILLGFNEF MTLLRNPLYL
701: GLLFVGFLLL KALWTQLDIP GEFRNGVVPG LISISAKFVP TVMNLLKNLA AEGEAPPTAN PENRRPSNNT SSHASSSENP TEHKSGSKTD

Best Arabidopsis Sequence Match ( AT1G72960.1 )
(BLAST)

001: MDADKSEGCC SVQLIDGDGI YNVSRIDHFI KDVKLADCGL SYAVVSIMGP QSSGKSTLLN HLFGTNFMEM DAFKGRSQTT KGIWLARCAG IEPCTLVMDL
101: EGTDGRERGE DDTAFEKQSA LFALAISDIV LINMWCHDIG REQAANKPLL KTVFQVMMRL FSPRKTTMLF VIRDKTRTPL ENLEPVLRED IQKIWDSVPK
201: PEAHKETPLS DFFNVEVVAL SSYEEKEEQF KEQIASLRQR FMHSIAPGGL AGDRRGVIPA SGFAFSADQI WRVIKENKDL DLPAHKVMVA TVRCEEIANE
301: KFAHFITNED WRKLDEEVQA GPVSNFGKRL TTILGSCLSE YDGEATFFDE GVRSSKRQQL EEKLLQLVNP AFQDVLGHIR WGILEKFKAS FDKALGIGEG
401: FSSASQDWFK ACMTQFDEEC AGAIIEQANW DTSKVRDKLV RDIEAHISSV RTSKLSELTS LYESKVHEAL SEPVEALLDG ANDETWSTVK KLHRRETESA
501: VSGLSSALAG FDMEEETRDR MVKSLQDYAR GVIETKAKEE AVRVLMRMKE RFGTIFSHDS DSMPRVWTGK EDLRAITKSA RSASLKLLSV MAVIRLGDEP
601: DNIEKTLTVA LLDPTKNDTS KKSITTSDPL ASSTWDEVPS SRTLITPVQC KSIWRQFKTE TEYTVTQAIS AQEANRRGNN WLPPPWAILA LIVLGFNEFM
701: TLLRNPLYLG VMFVAFLLAK ALWTQLDIPG EFRNGALPGL ISISAKFVPT VMNLIKNLAA QGEDPPAANP ENRRSSNNTS SSENPPDHKS SSKED

Arabidopsis Description

Protein ROOT HAIR DEFECTIVE 3 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSN0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.