CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96441	Canola	cytosol	67.48	74.44
AT1G72930.1	Thale cress	cytosol	43.9	61.36
AT1G72920.1	Thale cress	cytosol	55.28	49.45
Solyc02g032250.1.1	Tomato	cytosol	13.41	46.48
KRH09430	Soybean	cytosol	11.79	42.65
VIT_05s0051g00300.t01	Wine grape	plastid	18.7	41.44
CDX96440	Canola	cytosol	61.38	40.16
CDX72959	Canola	cytosol	60.98	39.37
CDX96438	Canola	cytosol	58.13	37.83
AT1G72950.1	Thale cress	cytosol	57.72	37.47
AT1G72940.1	Thale cress	cytosol	56.5	37.47
AT1G72900.1	Thale cress	cytosol	54.06	36.64
CDY11138	Canola	cytosol, plastid	36.59	33.96
KRH09419	Soybean	cytosol, plasma membrane, plastid	10.16	32.47
CDY48315	Canola	cytosol	50.81	32.38
CDY26232	Canola	cytosol	50.81	32.38
KRH53793	Soybean	cytosol	28.86	31.98
AT1G72910.1	Thale cress	cytosol	49.19	31.84
KRG89385	Soybean	cytosol	26.83	30.84
KRH08587	Soybean	cytosol	32.93	29.78
CDX72958	Canola	plastid	47.97	27.13
CDX72961	Canola	cytosol, plastid	61.79	26.48
CDY11139	Canola	plastid	41.87	26.21
CDX72960	Canola	plastid	45.53	25.51
CDY11140	Canola	mitochondrion	43.9	25.0
CDY67955	Canola	mitochondrion	43.5	24.83
CDY48026	Canola	mitochondrion	46.34	24.52
CDX96439	Canola	mitochondrion, plastid	38.62	23.46
KRH64151	Soybean	cytosol	26.83	14.22
CDX96437	Canola	golgi, mitochondrion	13.41	10.82
CDX68251	Canola	cytosol, plastid	40.24	8.32
CDY16898	Canola	plastid	16.67	7.45
CDX96442	Canola	cytosol	13.82	4.3

Protein Annotations

MapMan:26.8.2.1	Gene3D:3.40.50.10140	GO:A0A078J8A2	UniProt:A0A078J8A2	EnsemblPlants:CDY59925	ProteinID:CDY59925
ProteinID:CDY59925.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00027899001
InterPro:IPR000157	InterPro:IPR035897	PFAM:PF01582	PFscan:PS50104	PANTHER:PTHR43904	SMART:SM00255
SUPFAM:SSF52200	InterPro:TIR_dom	TMHMM:TMhelix	InterPro:Toll_tir_struct_dom_sf	UniParc:UPI0004EE9A16	:

Description

BnaC06g43800DBnaC06g43800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J8A2]

Coordinates

chrLK033822:+:5203..6550

Molecular Weight (calculated)

28558.7 Da

IEP (calculated)

8.478

GRAVY (calculated)

-0.157

Length

246 amino acids

Sequence
(BLAST)

001: MPSITATTSL RNYDVFLSFR GPDTRRNIVS FLYKELVRKN IRTFKDDKEL ESGRIISLEL ARAIEQSKLA VVVISKNYAA STWCLDELVK IMDFVNKGSL
101: TVIPVFYKVD PCHVRRQIGE VAVQFKKHEE RDHEKVLPWR QALTNLANIS GYCSCEREDE SKMVEDIAER ISMLIRTMKT RSNESNLAST DGHMESLLYS
201: LHLNLKKRKE EDLISFHTFC LRKTNNGYCF CLCLIIVVVW FICFIN

Best Arabidopsis Sequence Match ( AT1G72900.1 )
(BLAST)

001: MSSATATYNY DVFLSFRGPD TRRKFISFLY KELVGRDIRT FKDDKELENG QMISPELILA IEDSRFAVVV VSVNYAASSW CLDELVKIMD IQKNKGSITV
101: MPIFYGVNPC HLRRQIGDVA EQFKKHEARE KDLEKVLKWR QALAALADIS GDCSGEDDSK LVDVIADKIS KELMIVTRIS NGRNLVGIDK HMNELNRLMD
201: LNSNKGKRMV GIWARGGSCR SALAKYVYQT SCQHFDSHCF LGNVKRICQG NYFESHLHKE FLDNIQGENS SKQSLKKQKV LLVADDVDKL EQLDALAGDF
301: SGFGPGSVVI ITTKDKQLLI SYGIQLVYEA EFLTFQKFCR SFRSLAFKKR DDISAAFEWA LYI

Arabidopsis Description

Similar to part of disease resistance protein [Source:UniProtKB/TrEMBL;Acc:Q9SSN6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.