CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96439	Canola	mitochondrion, plastid	84.05	91.11
CDX72958	Canola	plastid	86.79	87.59
CDX96437	Canola	golgi, mitochondrion	48.97	70.49
CDY11140	Canola	mitochondrion	66.74	67.82
CDY48026	Canola	mitochondrion	71.3	67.31
CDY67955	Canola	mitochondrion	63.33	64.5
AT1G72890.2	Thale cress	mitochondrion, plastid	70.61	63.66
CDY11139	Canola	plastid	56.95	63.61
CDY11138	Canola	cytosol, plastid	35.08	58.11
CDY48315	Canola	cytosol	46.47	52.85
CDY26232	Canola	cytosol	46.24	52.59
CDX96440	Canola	cytosol	43.51	50.8
CDX72959	Canola	cytosol	43.51	50.13
CDX96438	Canola	cytosol	41.46	48.15
CDX96441	Canola	cytosol	23.46	46.19
CDY59925	Canola	cytosol	25.51	45.53
Solyc02g032250.1.1	Tomato	cytosol	7.06	43.66
VIT_05s0051g00300.t01	Wine grape	plastid	10.48	41.44
KRH08587	Soybean	cytosol	24.6	39.71
KRH09430	Soybean	cytosol	5.69	36.76
CDX72961	Canola	cytosol, plastid	44.19	33.8
KRG89385	Soybean	cytosol	16.4	33.64
KRH09419	Soybean	cytosol, plasma membrane, plastid	5.69	32.47
KRH53793	Soybean	cytosol	16.17	31.98
KRH64151	Soybean	cytosol	23.01	21.77
CDX68251	Canola	cytosol, plastid	58.09	21.43
CDY16898	Canola	plastid	18.22	14.55
CDX96442	Canola	cytosol	15.26	8.48

Protein Annotations

MapMan:26.8.2.1	Gene3D:3.40.50.10140	Gene3D:3.40.50.300	GO:A0A078C835	EnsemblPlants:CDX72960	ProteinID:CDX72960
ProteinID:CDX72960.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0043531	EnsemblPlantsGene:GSBRNA2T00103387001	InterPro:IPR000157
InterPro:IPR035897	InterPro:NB-ARC	InterPro:P-loop_NTPase	PFAM:PF00931	PFAM:PF01582	PRINTS:PR00364
PFscan:PS50104	PANTHER:PTHR11017	SMART:SM00255	SUPFAM:SSF52200	SUPFAM:SSF52540	InterPro:TIR_dom
InterPro:Toll_tir_struct_dom_sf	UniParc:UPI0004EF3068	SEG:seg	:	:	:

Description

BnaC06g34080D

Coordinates

chrLK031797:+:1326981..1328477

Molecular Weight (calculated)

50895.6 Da

IEP (calculated)

10.100

GRAVY (calculated)

-0.461

Length

439 amino acids

Sequence
(BLAST)

001: MNRILKKLSC FKTKVKSLRL FESNLSLSSS SSSSFTPQKY NVFLNFRGKD TRKNFISFLY RDLVAKEIRT FKDDKELERG RSFPPELLQA IKGSEIAVVV
101: VSKTYSASYW CLEELVKILK LEKQGLIKVL PIFYDVDPCD VRRQAGAVKK HFKKHKKRQS REKIESWRDA LTYLAELSGE CPQNWEDDSK LVDGITERIS
201: KMLFSVKPRN GNNLIGTDEH MNELYPRLDL NSNQGVQVIG IWGRGSMGRS ALARHVHESI SHNFEAHCFL EDVRKISQHC RKSHLQEELL SKMQGEGLNT
301: KSSHRCLKAI KARLRNKKVL LVANDVDKIE QLESLGEEFS WFGHGSRVVI TTQDRQLLSS WGVKSVYEVE LLKCYEVRKL FRSEAFKQRE VDPVGLEQST
401: YRPIYFPGIK FFWTLKCLVA LLCDRSKLRE RLNALIYSR

Best Arabidopsis Sequence Match ( AT1G72890.1 )
(BLAST)

001: MNTIFKKLSC FKKKVKSLRI FESRSLSSSS SSSFTPQKFD VFLSFRGKDT RKNFVSFLYK ALVSKGIRTF KDDEELERGR PIPPELRQAI KGSRIAVVVV
101: SVTYPASSWC LEELREILKL EKLGLLTVIP IFYEINPSDV RRQSGVVSKQ FKKHEKRQSR ERVKSWREAL TKLASLSGEC SKNWEDDSKL VDGITEKIST
201: KLFSEKPRND NILIGIDQHM GELYPLFNLN SNEDVQVIGI WGRGSNGRSA LASHVYQNIK HHFEAHCFLE DVRRISLHFR DSHLQDELLS NMQGEGLTTK
301: NCHRCLKTIK ARLRNKKVLL VANDVDKLEQ FDALAEEFSW FGPGSRIIIT TQDRQLLISS VVRSVYEVKL LRCYAVRELF RSNAFKERER DDPVGFDQST
401: YRAMYISGHV FLTLRYIFTL LCDRGQLRER INAIVHSL

Arabidopsis Description

Disease resistance protein (TIR-NBS class) [Source:UniProtKB/TrEMBL;Acc:F4IF04]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.