Factsheet for AT1G72890.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72958	Canola	plastid	63.24	70.8
CDX72960	Canola	plastid	63.66	70.61
Bra016029.1-P	Field mustard	plastid	61.19	69.95
CDX96439	Canola	mitochondrion, plastid	56.67	68.15
Bra016027.1-P	Field mustard	plastid	56.47	67.24
Bra008060.1-P	Field mustard	plastid	62.63	67.18
CDY48026	Canola	mitochondrion	61.81	64.73
CDY11139	Canola	plastid	50.72	62.85
Bra003864.1-P	Field mustard	mitochondrion	54.83	62.09
CDY11140	Canola	mitochondrion	55.03	62.04
CDY67955	Canola	mitochondrion	54.41	61.48
CDY11138	Canola	cytosol, plastid	32.03	58.87
AT1G72950.1	Thale cress	cytosol	45.17	58.05
AT1G72930.1	Thale cress	cytosol	20.33	56.25
CDX96437	Canola	golgi, mitochondrion	35.11	56.07
AT1G17615.1	Thale cress	cytosol, plastid	43.12	55.26
AT1G72900.1	Thale cress	cytosol	40.04	53.72
AT1G72940.1	Thale cress	cytosol	40.66	53.37
AT1G72920.1	Thale cress	cytosol	29.36	52.0
AT1G72910.1	Thale cress	cytosol	37.58	48.16
Solyc02g032250.1.1	Tomato	cytosol	6.98	47.89
KRH09430	Soybean	cytosol	5.95	42.65
VIT_05s0051g00300.t01	Wine grape	plastid	9.24	40.54
KRH08587	Soybean	cytosol	21.97	39.34
KRH09419	Soybean	cytosol, plasma membrane, plastid	6.16	38.96
KRG89385	Soybean	cytosol	16.02	36.45
KRH53793	Soybean	cytosol	15.81	34.68
KRH64151	Soybean	cytosol	22.79	23.92
CDX68251	Canola	cytosol, plastid	52.16	21.34
Bra003863.1-P	Field mustard	cytosol, plastid	51.75	21.0

Protein Annotations

MapMan:26.8.2.1	Gene3D:3.40.50.10140	Gene3D:3.40.50.300	EntrezGene:843620	ProteinID:AEE35388.1	ArrayExpress:AT1G72890
EnsemblPlantsGene:AT1G72890	RefSeq:AT1G72890	TAIR:AT1G72890	RefSeq:AT1G72890-TAIR-G	EnsemblPlants:AT1G72890.2	TAIR:AT1G72890.2
Unigene:At.48364	UniProt:F4IF04	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0043531	InterPro:IPR000157	InterPro:IPR035897	InterPro:NB-ARC	RefSeq:NP_001185387.1
InterPro:P-loop_NTPase	PFAM:PF00931	PFAM:PF01582	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281
PRINTS:PR00364	PFscan:PS50104	SMART:SM00255	SUPFAM:SSF52200	SUPFAM:SSF52540	InterPro:TIR_dom
TMHMM:TMhelix	InterPro:Toll_tir_struct_dom_sf	UniParc:UPI0001E92B79	SEG:seg	:	:

Description

Disease resistance protein (TIR-NBS class) [Source:UniProtKB/TrEMBL;Acc:F4IF04]

Coordinates

chr1:+:27429916..27432003

Molecular Weight (calculated)

56700.8 Da

IEP (calculated)

10.034

GRAVY (calculated)

-0.276

Length

487 amino acids

Sequence
(BLAST)

001: MNTIFKKLSC FKKKVKSLRI FESRSLSSSS SSSFTPQKFD VFLSFRGKDT RKNFVSFLYK ALVSKGIRTF KDDEELERGR PIPPELRQAI KGSRIAVVVV
101: SVTYPASSWC LEELREILKL EKLGLLTVIP IFYEINPSDV RRQSGVVSKQ FKKHEKRQSR ERVKSWREAL TKLASLSGEC SKNWEDLSNR FSKFRFLSLF
201: LKGLRLCFSR EDDSKLVDGI TEKISTKLFS EKPRNDNILI GIDQHMGELY PLFNLNSNED VQVIGIWGRG SNGRSALASH VYQNIKHHFE AHCFLEDVRR
301: ISLHFRDSHL QDELLSNMQG EGLTTKNCHR CLKTIKARLR NKKVLLVAND VDKLEQFDAL AEEFSWFGPG SRIIITTQDR QLLISSVVRS VYEVKLLRCY
401: AVRELFRSNA FKERERDDPV GFDQSTYRAM YISGHVFLTL RYIFTLLCDR VNVTPFFYIW MCHLCMDLCT IHLVNYFILK TVHNKFI

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.