Factsheet for Bra016029.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72958	Canola	plastid	88.03	86.21
Bra016027.1-P	Field mustard	plastid	79.11	82.4
Bra008060.1-P	Field mustard	plastid	72.77	68.28
Bra003864.1-P	Field mustard	mitochondrion	65.73	65.12
AT1G72890.2	Thale cress	mitochondrion, plastid	69.95	61.19
Bra025962.1-P	Field mustard	cytosol	49.3	54.4
Bra016028.1-P	Field mustard	cytosol	44.84	50.53
Solyc02g032250.1.1	Tomato	cytosol	7.98	47.89
KRH08587	Soybean	cytosol	26.76	41.91
VIT_05s0051g00300.t01	Wine grape	plastid	10.8	41.44
KRH09430	Soybean	cytosol	6.57	41.18
KRH53793	Soybean	cytosol	18.31	35.14
KRH09419	Soybean	cytosol, plasma membrane, plastid	6.34	35.06
KRG89385	Soybean	cytosol	17.61	35.05
KRH64151	Soybean	cytosol	25.59	23.49
Bra003863.1-P	Field mustard	cytosol, plastid	59.15	21.0
Bra016026.1-P	Field mustard	cytosol	47.42	17.7

Protein Annotations

MapMan:26.8.2.1	Gene3D:3.40.50.10140	Gene3D:3.40.50.300	ProteinID:ACP30576	ProteinID:ACP30576.1	EnsemblPlantsGene:Bra016029
EnsemblPlants:Bra016029.1	EnsemblPlants:Bra016029.1-P	UniProt:D1GED4	EMBL:FJ842795	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0043531	InterPro:IPR000157	InterPro:IPR035897
InterPro:NB-ARC	InterPro:P-loop_NTPase	PFAM:PF00931	PFAM:PF01582	PRINTS:PR00364	PFscan:PS50104
PANTHER:PTHR11017	SMART:SM00255	SUPFAM:SSF52200	SUPFAM:SSF52540	InterPro:TIR_dom	TMHMM:TMhelix
InterPro:Toll_tir_struct_dom_sf	UniParc:UPI0001BE5AF9	SEG:seg	:	:	:

Description

AT1G72890 (E=3e-153) | disease resistance protein (TIR-NBS class), putative

Coordinates

chrA07:+:19765203..19766631

Molecular Weight (calculated)

49285.9 Da

IEP (calculated)

9.819

GRAVY (calculated)

-0.358

Length

426 amino acids

Sequence
(BLAST)

001: MNRIMKKLSC FKTKVKSLRL LESRSSLSSS SFTPQKYDVF LSFRGPDTRK NFVSFLYKEL VAKEIRTFKD DKELERGRLI SPELLQAIEG SEIAVVVVSK
101: TYSASNWCLE ELVKILKLEK KGLIKVLPIF YEVDPSHVRW QREEVAKQFK KHEKRQSREK VKSWRDALNY LAELSGECSK NWEDDSKLVD GITERVSKML
201: FSVKPRNGNN LIGIDEHMNE LYPRLDLSSK EGVRVIGIWG RGSMGRSALA RHVYESISHN FEAHCFLEDV RKISQHCRKS HLQEELLSKM QGEGLSTKSS
301: HRCLKAIKAR LRNKKVLLVA NDVDKIEQLE SLGEEFSWFG HGSRVVIATQ DRQLLSSWGV KSVYEVELLK CYEVRKLFRS EAFKQREVDP IGLEQCTYHP
401: HMNFLGINFI LKCLVALFLI VVHTIV

Best Arabidopsis Sequence Match ( AT1G72890.1 )
(BLAST)

001: MNTIFKKLSC FKKKVKSLRI FESRSLSSSS SSSFTPQKFD VFLSFRGKDT RKNFVSFLYK ALVSKGIRTF KDDEELERGR PIPPELRQAI KGSRIAVVVV
101: SVTYPASSWC LEELREILKL EKLGLLTVIP IFYEINPSDV RRQSGVVSKQ FKKHEKRQSR ERVKSWREAL TKLASLSGEC SKNWEDDSKL VDGITEKIST
201: KLFSEKPRND NILIGIDQHM GELYPLFNLN SNEDVQVIGI WGRGSNGRSA LASHVYQNIK HHFEAHCFLE DVRRISLHFR DSHLQDELLS NMQGEGLTTK
301: NCHRCLKTIK ARLRNKKVLL VANDVDKLEQ FDALAEEFSW FGPGSRIIIT TQDRQLLISS VVRSVYEVKL LRCYAVRELF RSNAFKERER DDPVGFDQST
401: YRAMYISGHV FLTLRYIFTL LCDRGQLRER INAIVHSL

Arabidopsis Description

Disease resistance protein (TIR-NBS class) [Source:UniProtKB/TrEMBL;Acc:F4IF04]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.