Factsheet for Bra003863.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68251	Canola	cytosol, plastid	97.17	97.98
Bra016026.1-P	Field mustard	cytosol	75.33	79.23
Bra003864.1-P	Field mustard	mitochondrion	23.17	64.65
Bra016029.1-P	Field mustard	plastid	21.0	59.15
Bra016027.1-P	Field mustard	plastid	19.25	56.48
Bra008060.1-P	Field mustard	plastid	21.08	55.73
AT1G72890.2	Thale cress	mitochondrion, plastid	21.0	51.75
Bra025962.1-P	Field mustard	cytosol	16.08	50.0
Bra016028.1-P	Field mustard	cytosol	14.33	45.5
Solyc02g032250.1.1	Tomato	cytosol	2.33	39.44
KRH09430	Soybean	cytosol	2.08	36.76
VIT_05s0051g00300.t01	Wine grape	plastid	3.17	34.23
KRH08587	Soybean	cytosol	7.5	33.09
KRH09419	Soybean	cytosol, plasma membrane, plastid	2.0	31.17
KRG89385	Soybean	cytosol	5.5	30.84
KRH53793	Soybean	cytosol	5.67	30.63
KRH64151	Soybean	cytosol	8.33	21.55

Protein Annotations

MapMan:13.7.2.2	MapMan:26.8.2.1	Gene3D:3.40.50.10140	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra003863	EnsemblPlants:Bra003863.1
EnsemblPlants:Bra003863.1-P	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005515	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0043531	InterPro:G_GB1_RHD3_dom
InterPro:IPR000157	InterPro:IPR030386	InterPro:IPR035897	UniProt:M4CI30	HAMAP:MF_03109	InterPro:NB-ARC
InterPro:P-loop_NTPase	PFAM:PF00931	PFAM:PF01582	PFAM:PF05879	PFscan:PS50104	PFscan:PS51715
PANTHER:PTHR11649	PANTHER:PTHR11649:SF81	InterPro:RHD3/Sey1	SMART:SM00255	SUPFAM:SSF52200	SUPFAM:SSF52540
InterPro:TIR_dom	InterPro:Toll_tir_struct_dom_sf	UniParc:UPI00025417A1	SEG:seg	:	:

Description

AT1G72960 (E=0.0) | root hair defective 3 GTP-binding (RHD3) family protein

Coordinates

chrA07:-:15427501..15434332

Molecular Weight (calculated)

134602.0 Da

IEP (calculated)

6.586

GRAVY (calculated)

-0.294

Length

1200 amino acids

Sequence
(BLAST)

0001: MNTILQNVSC FKRKVSSGRP FDSRSLSSSS TPQKYDVFLS FRGADTRKNF VSFLYKQLET KGIRAFKDDN ALVCGRSIAP VIVQGIKGST IAVVVISPTY
0101: PASFWCLEEL VMILKLEREK LLTVVPIFYE VEPNDLKRQT GKLVKQFKKH EKRHSTERVH SWRDALNRLA TLSGDCSKIS EDDATLVDRV TERISKILSS
0201: NVISFDEHMK RLYPLLDLNS NEGVQVSGIW GRGSKGRSAF AKHVYKNISP DFEAHCFLED VRNISLHLQE EELLSKMQGE VLMSTKSSHM CLDAIKARLG
0301: NKKVLLVAND VDKIEKLDAL ADEFSWFGPG SRIIIVTQDK HLLSSWGVKS VYEVELLRCC EVRKLWRSEA IIRRDDHVGS ELSFPTLICN DKSEGNCSVQ
0401: LIDGDGTYNV SGIDHFIKEV KLGECGLSYA VVSIMGPQSS GMHSFREDAL LYYSESFKNS FCDITGKSTL LNNLFGTNFM EMDAFKGRSQ TTKGIWLARC
0501: AGIEPCTLVM DLEGTDGRER GEDDTAFEKQ SALFALAISD IVLINMWCHD IGREQAANKP LLKTVFQVMM RLFSPRKTTM LFVIRDKTRT PLENLEPVLR
0601: EDIQKIWDSV PKPEAHKETP MSDFFNVEVV ALSSYEEKEE QFKEQVASLR QRFMHSIAPG GLAGDRRGVI PASGFAFSAD QIWRVIKENK DLDLPAHKVM
0701: VATVRCEEIS NEKFAHFITN EDWRKLDEEV QAGPVSGFGK RLTSIIGSCL SEYDGEATFF DEGVRSSKRH QLEEKLLQLV NPAFQDVLGH IRWGMLEKFK
0801: ASFDKALEIG EGFSSASTTW LKACMDQFDE ECAGAIIEQA NWDTTKVREK LVRDIEAHVS SVRTSKLSEL TSQYETKLHT ALSEPVEALL EGANDQTWMT
0901: VKKLHGRETE TAVSGFSSAL AAFDIEEETR DKMVKSLQEY SRGVIESKAK EEAGRVLMRM KDRFATIFSN DADSMPRVWT GNEDLRAITK AARSASLKLL
1001: SVMAVMRLGD ETDNIEKTLS VALLDSTTSK KSITASDPLA SSTWDDIPSS RTLITPVHCK SIWRQFKTET EYTEANKRGS NWLPPPWAIF ALIILGFNEF
1101: MTLLRNPLYL GVLFVGFLLL KALWTQLDIP GEFRNGALPG IISISAKFVP TVMNLVKNLA AQGEAPPTAN PENRRPSNNT SSNASSSDNP TEHKSASKTD

Best Arabidopsis Sequence Match ( AT1G72960.1 )
(BLAST)

001: MDADKSEGCC SVQLIDGDGI YNVSRIDHFI KDVKLADCGL SYAVVSIMGP QSSGKSTLLN HLFGTNFMEM DAFKGRSQTT KGIWLARCAG IEPCTLVMDL
101: EGTDGRERGE DDTAFEKQSA LFALAISDIV LINMWCHDIG REQAANKPLL KTVFQVMMRL FSPRKTTMLF VIRDKTRTPL ENLEPVLRED IQKIWDSVPK
201: PEAHKETPLS DFFNVEVVAL SSYEEKEEQF KEQIASLRQR FMHSIAPGGL AGDRRGVIPA SGFAFSADQI WRVIKENKDL DLPAHKVMVA TVRCEEIANE
301: KFAHFITNED WRKLDEEVQA GPVSNFGKRL TTILGSCLSE YDGEATFFDE GVRSSKRQQL EEKLLQLVNP AFQDVLGHIR WGILEKFKAS FDKALGIGEG
401: FSSASQDWFK ACMTQFDEEC AGAIIEQANW DTSKVRDKLV RDIEAHISSV RTSKLSELTS LYESKVHEAL SEPVEALLDG ANDETWSTVK KLHRRETESA
501: VSGLSSALAG FDMEEETRDR MVKSLQDYAR GVIETKAKEE AVRVLMRMKE RFGTIFSHDS DSMPRVWTGK EDLRAITKSA RSASLKLLSV MAVIRLGDEP
601: DNIEKTLTVA LLDPTKNDTS KKSITTSDPL ASSTWDEVPS SRTLITPVQC KSIWRQFKTE TEYTVTQAIS AQEANRRGNN WLPPPWAILA LIVLGFNEFM
701: TLLRNPLYLG VMFVAFLLAK ALWTQLDIPG EFRNGALPGL ISISAKFVPT VMNLIKNLAA QGEDPPAANP ENRRSSNNTS SSENPPDHKS SSKED

Arabidopsis Description

Protein ROOT HAIR DEFECTIVE 3 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSN0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.