CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016029.1-P	Field mustard	plastid	86.21	88.03
CDX96439	Canola	mitochondrion, plastid	81.38	87.41
CDX72960	Canola	plastid	87.59	86.79
CDX96437	Canola	golgi, mitochondrion	48.97	69.84
CDY11140	Canola	mitochondrion	68.28	68.75
CDY48026	Canola	mitochondrion	73.33	68.6
CDY67955	Canola	mitochondrion	65.06	65.66
CDY11139	Canola	plastid	57.7	63.87
AT1G72890.2	Thale cress	mitochondrion, plastid	70.8	63.24
CDY11138	Canola	cytosol, plastid	35.63	58.49
CDY48315	Canola	cytosol	48.74	54.92
CDY26232	Canola	cytosol	48.51	54.66
CDX96440	Canola	cytosol	45.29	52.39
CDX72959	Canola	cytosol	45.52	51.97
CDX96438	Canola	cytosol	43.91	50.53
CDX96441	Canola	cytosol	24.6	47.98
CDY59925	Canola	cytosol	27.13	47.97
Solyc02g032250.1.1	Tomato	cytosol	7.82	47.89
KRH09430	Soybean	cytosol	6.44	41.18
KRH08587	Soybean	cytosol	25.29	40.44
VIT_05s0051g00300.t01	Wine grape	plastid	9.89	38.74
KRH09419	Soybean	cytosol, plasma membrane, plastid	6.21	35.06
CDX72961	Canola	cytosol, plastid	45.75	34.67
KRG89385	Soybean	cytosol	16.78	34.11
KRH53793	Soybean	cytosol	17.01	33.33
KRH64151	Soybean	cytosol	24.14	22.63
CDX68251	Canola	cytosol, plastid	58.62	21.43
CDY16898	Canola	plastid	18.85	14.91
CDX96442	Canola	cytosol	15.86	8.73

Protein Annotations

MapMan:26.8.2.1	Gene3D:3.40.50.10140	Gene3D:3.40.50.300	GO:A0A078CD99	EnsemblPlants:CDX72958	ProteinID:CDX72958
ProteinID:CDX72958.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154
GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0043531	EnsemblPlantsGene:GSBRNA2T00103384001	InterPro:IPR000157
InterPro:IPR035897	InterPro:NB-ARC	InterPro:P-loop_NTPase	PFAM:PF00931	PFAM:PF01582	PRINTS:PR00364
PFscan:PS50104	PANTHER:PTHR11017	SMART:SM00255	SUPFAM:SSF52200	SUPFAM:SSF52540	InterPro:TIR_dom
InterPro:Toll_tir_struct_dom_sf	UniParc:UPI0004EF3B26	SEG:seg	:	:	:

Description

BnaC06g34060D

Coordinates

chrLK031797:+:1315746..1317129

Molecular Weight (calculated)

50386.1 Da

IEP (calculated)

9.680

GRAVY (calculated)

-0.406

Length

435 amino acids

Sequence
(BLAST)

001: MNRIMKKLSC FKTKVKSLRL LESRSSLSSS SFTPQKYDVF LSFRGPDTRK NFVSFLYKEL VAKEIRTFKD DKELERGRPI SPELLQAIKG SEIAVVVVSK
101: TYSASCWCLE ELVKILKREK KGLIKVLPIF YEVDPSHVRW QREEVAKQFK KHEKRQSREK VKSWRNALNY LAEICGECSK NWEDDSKLVD EITEIISEML
201: FSVTPLNGNK LIGIDEHMNE LYPRLDLNSN QGVQVIGIWG RGSMGRSALA RHVHESISHN FEAHCFLEDV RKISQHCRKS HLQEELLSKM QGEGLNIKSS
301: HRCLKAIKAR LRNKKVLLVA NDVDKIEQLE ALGEEFSWFG HGSRVVITTQ DRQLLSSWGV KSVYEVELLK CYEVRKLFRS EAFKQREVDP VGLEQSTYHP
401: HMNFLGVNFF LKCLVALLCD RGQLKERLSA LIYSR

Best Arabidopsis Sequence Match ( AT1G72890.1 )
(BLAST)

001: MNTIFKKLSC FKKKVKSLRI FESRSLSSSS SSSFTPQKFD VFLSFRGKDT RKNFVSFLYK ALVSKGIRTF KDDEELERGR PIPPELRQAI KGSRIAVVVV
101: SVTYPASSWC LEELREILKL EKLGLLTVIP IFYEINPSDV RRQSGVVSKQ FKKHEKRQSR ERVKSWREAL TKLASLSGEC SKNWEDDSKL VDGITEKIST
201: KLFSEKPRND NILIGIDQHM GELYPLFNLN SNEDVQVIGI WGRGSNGRSA LASHVYQNIK HHFEAHCFLE DVRRISLHFR DSHLQDELLS NMQGEGLTTK
301: NCHRCLKTIK ARLRNKKVLL VANDVDKLEQ FDALAEEFSW FGPGSRIIIT TQDRQLLISS VVRSVYEVKL LRCYAVRELF RSNAFKERER DDPVGFDQST
401: YRAMYISGHV FLTLRYIFTL LCDRGQLRER INAIVHSL

Arabidopsis Description

Disease resistance protein (TIR-NBS class) [Source:UniProtKB/TrEMBL;Acc:F4IF04]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.