CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67955	Canola	mitochondrion	92.36	92.58
CDY11139	Canola	plastid	63.66	69.97
CDX72958	Canola	plastid	68.75	68.28
CDX72960	Canola	plastid	67.82	66.74
CDX96439	Canola	mitochondrion, plastid	60.88	64.94
CDY11138	Canola	cytosol, plastid	39.12	63.77
CDY48026	Canola	mitochondrion	63.19	58.71
AT1G72890.2	Thale cress	mitochondrion, plastid	62.04	55.03
CDX96437	Canola	golgi, mitochondrion	37.73	53.44
CDY26232	Canola	cytosol	46.53	52.07
CDY48315	Canola	cytosol	45.6	51.04
CDX96440	Canola	cytosol	43.98	50.53
CDX72959	Canola	cytosol	43.98	49.87
CDX96438	Canola	cytosol	41.9	47.88
CDX96441	Canola	cytosol	23.84	46.19
Solyc02g032250.1.1	Tomato	cytosol	7.41	45.07
CDY59925	Canola	cytosol	25.0	43.9
KRH09430	Soybean	cytosol	6.71	42.65
VIT_05s0051g00300.t01	Wine grape	plastid	9.95	38.74
KRH08587	Soybean	cytosol	24.07	38.24
KRG89385	Soybean	cytosol	18.52	37.38
KRH09419	Soybean	cytosol, plasma membrane, plastid	6.48	36.36
KRH53793	Soybean	cytosol	17.13	33.33
CDX72961	Canola	cytosol, plastid	44.21	33.28
CDX68251	Canola	cytosol, plastid	64.35	23.36
KRH64151	Soybean	cytosol	23.84	22.2
CDY16898	Canola	plastid	17.13	13.45
CDX96442	Canola	cytosol	13.89	7.59

Protein Annotations

MapMan:26.8.2.1	Gene3D:3.40.50.10140	Gene3D:3.40.50.300	GO:A0A078F9K7	UniProt:A0A078F9K7	EnsemblPlants:CDY11140
ProteinID:CDY11140	ProteinID:CDY11140.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0043531	EnsemblPlantsGene:GSBRNA2T00049133001
InterPro:IPR000157	InterPro:IPR035897	InterPro:NB-ARC	InterPro:P-loop_NTPase	PFAM:PF00931	PFAM:PF01582
PFscan:PS50104	PANTHER:PTHR11017	SMART:SM00255	SUPFAM:SSF52200	SUPFAM:SSF52540	InterPro:TIR_dom
InterPro:Toll_tir_struct_dom_sf	UniParc:UPI0004EF23FC	SEG:seg	:	:	:

Description

BnaC06g23920DBnaC06g23920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9K7]

Coordinates

chrLK032009:-:595306..598536

Molecular Weight (calculated)

49225.6 Da

IEP (calculated)

9.565

GRAVY (calculated)

-0.340

Length

432 amino acids

Sequence
(BLAST)

001: MNTVLKKRSC FKTKVKSLRL FESRSSLSSS FSFPPKKYDV FLSFRGADTR KNFVSFLYKE LETKGIQTFK DDKALVRGRP IAPELVQAIQ GTRIAVVVVS
101: PTYSASYWCL EELVKILKLE KKGLLIVVPI FYEVDPCQVR RQKGEVAEQF KKHKKRYSRE RVRSWRNALT RVTILSGDCS KNCKDDATLV DGITKRISEI
201: LSTETQSNGN NLIGFDKHMK ELYPLLDLNS DEGVQVSGIW GRGSNGISAL ARGVYQDISP KFEAHCFLED LRKISLDCQK SHLQEELLSK MEGPCLSTKS
301: SRMCFDAIKA RLGNKKVLLV ANDVDKIEKL DALANEFSWF GPGSRIIIVT QDKQLLSSWG VKSVYEVELL RCCEVGKLWR SEAFKQKQDP ECLEGSMNLP
401: GSNLFSSLKY LMNYLSDRDQ LRERLNEIIY SL

Best Arabidopsis Sequence Match ( AT1G72890.1 )
(BLAST)

001: MNTIFKKLSC FKKKVKSLRI FESRSLSSSS SSSFTPQKFD VFLSFRGKDT RKNFVSFLYK ALVSKGIRTF KDDEELERGR PIPPELRQAI KGSRIAVVVV
101: SVTYPASSWC LEELREILKL EKLGLLTVIP IFYEINPSDV RRQSGVVSKQ FKKHEKRQSR ERVKSWREAL TKLASLSGEC SKNWEDDSKL VDGITEKIST
201: KLFSEKPRND NILIGIDQHM GELYPLFNLN SNEDVQVIGI WGRGSNGRSA LASHVYQNIK HHFEAHCFLE DVRRISLHFR DSHLQDELLS NMQGEGLTTK
301: NCHRCLKTIK ARLRNKKVLL VANDVDKLEQ FDALAEEFSW FGPGSRIIIT TQDRQLLISS VVRSVYEVKL LRCYAVRELF RSNAFKERER DDPVGFDQST
401: YRAMYISGHV FLTLRYIFTL LCDRGQLRER INAIVHSL

Arabidopsis Description

Disease resistance protein (TIR-NBS class) [Source:UniProtKB/TrEMBL;Acc:F4IF04]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.