CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11138	Canola	cytosol, plastid	48.09	71.32
CDY67955	Canola	mitochondrion	72.26	65.89
CDY11140	Canola	mitochondrion	69.97	63.66
CDX72958	Canola	plastid	63.87	57.7
CDX72960	Canola	plastid	63.61	56.95
CDX96439	Canola	mitochondrion, plastid	57.51	55.8
CDY48026	Canola	mitochondrion	63.36	53.55
AT1G72890.2	Thale cress	mitochondrion, plastid	62.85	50.72
CDY26232	Canola	cytosol	48.6	49.48
CDY48315	Canola	cytosol	47.84	48.7
CDX96437	Canola	golgi, mitochondrion	37.15	47.87
CDX96440	Canola	cytosol	45.04	47.07
CDX72959	Canola	cytosol	44.78	46.19
CDX96438	Canola	cytosol	43.0	44.71
CDX96441	Canola	cytosol	24.17	42.6
CDY59925	Canola	cytosol	26.21	41.87
Solyc02g032250.1.1	Tomato	cytosol	7.38	40.85
KRH09430	Soybean	cytosol	6.62	38.24
VIT_05s0051g00300.t01	Wine grape	plastid	10.69	37.84
KRH08587	Soybean	cytosol	23.16	33.46
KRH09419	Soybean	cytosol, plasma membrane, plastid	6.36	32.47
KRH53793	Soybean	cytosol	17.81	31.53
KRG89385	Soybean	cytosol	16.79	30.84
CDX72961	Canola	cytosol, plastid	44.78	30.66
CDX68251	Canola	cytosol, plastid	88.55	29.24
KRH64151	Soybean	cytosol	23.41	19.83
CDY16898	Canola	plastid	17.81	12.73
CDX96442	Canola	cytosol	16.03	7.97

Protein Annotations

MapMan:26.8.2.1	Gene3D:3.40.50.10140	Gene3D:3.40.50.300	GO:A0A078FDX5	UniProt:A0A078FDX5	EnsemblPlants:CDY11139
ProteinID:CDY11139	ProteinID:CDY11139.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0043531	EnsemblPlantsGene:GSBRNA2T00049131001
InterPro:IPR000157	InterPro:IPR035897	InterPro:NB-ARC	InterPro:P-loop_NTPase	PFAM:PF00931	PFAM:PF01582
PFscan:PS50104	PANTHER:PTHR11017	SMART:SM00255	SUPFAM:SSF52200	SUPFAM:SSF52540	InterPro:TIR_dom
InterPro:Toll_tir_struct_dom_sf	UniParc:UPI0004EF1811	SEG:seg	:	:	:

Description

BnaC06g23910DBnaC06g23910D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDX5]

Coordinates

chrLK032009:-:575645..576913

Molecular Weight (calculated)

44487.7 Da

IEP (calculated)

9.220

GRAVY (calculated)

-0.212

Length

393 amino acids

Sequence
(BLAST)

001: MNTILQNVSC FKRKVSSGRP FDSRSLSSSS TTPKKYDVFL SFRGADTRKN FVSFLYKELE AKGIRAFKDD NALVCGRSIA PVIIQAIKGS TIAVVVVSPT
101: YPASFWCLEE LVMILKLERE KLLTVVPIFY EVEPNDLKRQ TGKLVKQFKK HERRHSIERV NSWRDALNRL ATLSGVCSKN SEDDATLVDR VTERISKILS
201: SNVISFDEHM KRLYPLLDLN SNEGVQVSGI WGRGSKGRSA FAKHVYKNIS PNFEAHCFLE DVRSISLHLQ EEELLSKMQG QILMSTKSSH MCLDAIKARL
301: GNRKVLLVAN DVDKIEKLDA LADEFSWFGP GSRIIIVTQD KHLLSSWGVK SVYEVELLKC CEVGKLWRSE AFIRRDDHVG SELSFSTLTC NEI

Best Arabidopsis Sequence Match ( AT1G17615.1 )
(BLAST)

001: MYSSSSSSSA TPQKFDVFLS FRGKDTRRTF ISFLYKELIE MGIRTFKDDV ELQSGRRIAS DLLAAIENSK IAVVIISKNY SASPWCLQEL VMIMDVEKKG
101: SIIVMPIFYN VEPAHVRRQI EQVAKQFRKH EGRENYETVV SWRQALTNLA SISGHCSRDC EDDSKLLDEI TKRISDMLFS VTPPSESINN QLGFDARMKE
201: LYPLLDLDSN EGVRVVGIWA RGGNGRSALA RYVYQKIFKK FQSHCFLENV KGIPHDCQMS NLRDEFLIRI QGGYSRMKTS GLIKKRLMSQ KVLLVANNVD
301: KLEQLDALAE YFNCFGPGSI VLITTQDKQL LVAFGIKVVY EVECLRCFEV RQLFRQIGFR ERDLNVGSEL SSPISGTESS

Arabidopsis Description

Disease resistance protein (TIR-NBS class) [Source:UniProtKB/TrEMBL;Acc:Q4PT31]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.